Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3132

Experiment: Succinic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid (C)
3,754,450	+		Psyr_3131	0.12	-0.4
3,754,451	-		Psyr_3131	0.12	+1.5
3,754,506	+		Psyr_3131	0.17	+0.1
3,754,713	+		Psyr_3131	0.36	+0.6
3,754,713	+		Psyr_3131	0.36	+1.2
3,754,713	+		Psyr_3131	0.36	-0.1
3,754,713	+		Psyr_3131	0.36	+0.0
3,754,713	+		Psyr_3131	0.36	+1.6
3,754,713	+		Psyr_3131	0.36	-3.0
3,754,713	+		Psyr_3131	0.36	-1.4
3,754,714	-		Psyr_3131	0.36	+1.1
3,754,714	-		Psyr_3131	0.36	+0.5
3,754,714	-		Psyr_3131	0.36	+0.7
3,754,714	-		Psyr_3131	0.36	-0.4
3,754,833	+		Psyr_3131	0.47	+0.9
3,755,220	+		Psyr_3131	0.83	+0.1
3,755,220	+		Psyr_3131	0.83	-0.9
3,755,220	+		Psyr_3131	0.83	+2.7
3,755,221	-		Psyr_3131	0.83	+0.3
3,755,279	-		Psyr_3131	0.88	+1.1
3,755,338	+				-0.4
3,755,338	+				-0.4
3,755,462	+				-0.3
3,755,463	-				+1.6
3,755,463	-				-0.8
3,755,463	-				+0.9
3,755,651	+				-0.4
3,755,652	-				-0.8
3,755,663	+				+1.1
3,755,664	-				+1.0
3,755,843	+		Psyr_3132	0.14	+0.6
3,755,843	+		Psyr_3132	0.14	+0.7
3,755,843	+		Psyr_3132	0.14	-0.2
3,755,843	+		Psyr_3132	0.14	+0.4
3,755,844	-		Psyr_3132	0.14	-0.3
3,755,844	-		Psyr_3132	0.14	-0.8
3,755,844	-		Psyr_3132	0.14	-0.9
3,755,844	-		Psyr_3132	0.14	+0.2
3,755,889	-		Psyr_3132	0.16	-1.6
3,755,889	-		Psyr_3132	0.16	-1.0
3,755,901	+		Psyr_3132	0.16	+2.1
3,755,902	-		Psyr_3132	0.16	+0.8
3,755,902	-		Psyr_3132	0.16	+1.2
3,755,972	+		Psyr_3132	0.19	-1.2
3,755,973	-		Psyr_3132	0.19	+0.1
3,755,973	-		Psyr_3132	0.19	-1.7
3,756,548	+		Psyr_3132	0.38	+0.3
3,756,548	+		Psyr_3132	0.38	+1.9
3,756,571	+		Psyr_3132	0.38	+1.1
3,756,571	+		Psyr_3132	0.38	+1.4
3,756,571	+		Psyr_3132	0.38	+0.7
3,756,572	-		Psyr_3132	0.38	-0.7
3,756,572	-		Psyr_3132	0.38	-1.3
3,756,572	-		Psyr_3132	0.38	+0.7
3,756,696	-		Psyr_3132	0.42	+1.2
3,756,696	-		Psyr_3132	0.42	+0.4
3,756,788	+		Psyr_3132	0.46	+0.5
3,756,788	+		Psyr_3132	0.46	+1.0
3,756,789	-		Psyr_3132	0.46	-0.4
3,756,874	-		Psyr_3132	0.48	+0.7
3,756,874	-		Psyr_3132	0.48	+0.4
3,756,874	-		Psyr_3132	0.48	-1.2
3,757,075	+		Psyr_3132	0.55	-0.4
3,757,079	+		Psyr_3132	0.55	+0.4
3,757,079	+		Psyr_3132	0.55	+1.7
3,757,079	+		Psyr_3132	0.55	-0.2
3,757,079	+		Psyr_3132	0.55	+1.5
3,757,079	+		Psyr_3132	0.55	+1.6
3,757,079	+		Psyr_3132	0.55	-0.4
3,757,079	+		Psyr_3132	0.55	-0.1
3,757,079	+		Psyr_3132	0.55	-0.4
3,757,079	+		Psyr_3132	0.55	-0.7
3,757,079	+		Psyr_3132	0.55	+0.1
3,757,079	+		Psyr_3132	0.55	+0.1
3,757,079	+		Psyr_3132	0.55	+2.1
3,757,079	+		Psyr_3132	0.55	-0.9
3,757,080	-		Psyr_3132	0.55	+0.8
3,757,080	-		Psyr_3132	0.55	-1.0
3,757,080	-		Psyr_3132	0.55	-2.4
3,757,080	-		Psyr_3132	0.55	+0.3
3,757,080	-		Psyr_3132	0.55	+0.4
3,757,080	-		Psyr_3132	0.55	-0.4
3,757,080	-		Psyr_3132	0.55	+1.0
3,757,080	-		Psyr_3132	0.55	+0.4
3,757,080	-		Psyr_3132	0.55	+1.1
3,757,161	+		Psyr_3132	0.58	+1.4
3,757,161	+		Psyr_3132	0.58	-1.4
3,757,162	-		Psyr_3132	0.58	+0.1
3,757,162	-		Psyr_3132	0.58	+1.4
3,757,178	+		Psyr_3132	0.58	-0.9
3,757,178	+		Psyr_3132	0.58	-0.9
3,757,178	+		Psyr_3132	0.58	+0.5
3,757,178	+		Psyr_3132	0.58	-0.8
3,757,178	+		Psyr_3132	0.58	+0.3
3,757,179	-		Psyr_3132	0.58	-0.4
3,757,179	-		Psyr_3132	0.58	-1.0
3,757,206	-		Psyr_3132	0.59	+0.6
3,757,206	-		Psyr_3132	0.59	+1.0
3,757,325	+		Psyr_3132	0.63	-0.4
3,757,325	+		Psyr_3132	0.63	+1.1
3,757,326	-		Psyr_3132	0.63	+2.3
3,757,326	-		Psyr_3132	0.63	-0.1
3,757,343	+		Psyr_3132	0.64	-0.4
3,757,344	-		Psyr_3132	0.64	+0.9
3,757,344	-		Psyr_3132	0.64	-0.1
3,757,487	+		Psyr_3132	0.69	-0.5
3,757,487	+		Psyr_3132	0.69	+0.3
3,757,487	+		Psyr_3132	0.69	+0.1
3,757,487	+		Psyr_3132	0.69	-0.1
3,757,487	+		Psyr_3132	0.69	+0.4
3,757,488	-		Psyr_3132	0.69	-0.2
3,757,488	-		Psyr_3132	0.69	-0.8
3,757,488	-		Psyr_3132	0.69	+1.6
3,757,488	-		Psyr_3132	0.69	+1.6
3,757,488	-		Psyr_3132	0.69	-0.2
3,757,488	-		Psyr_3132	0.69	+1.0
3,757,488	-		Psyr_3132	0.69	+0.6
3,757,634	+		Psyr_3132	0.73	+0.7
3,757,634	+		Psyr_3132	0.73	+0.3
3,757,635	-		Psyr_3132	0.73	+0.7
3,757,635	-		Psyr_3132	0.73	+1.7
3,757,635	-		Psyr_3132	0.73	-1.4
3,757,635	-		Psyr_3132	0.73	+0.8
3,757,760	+		Psyr_3132	0.77	-2.0
3,757,760	+		Psyr_3132	0.77	+0.6
3,757,761	-		Psyr_3132	0.78	+2.1
3,757,761	-		Psyr_3132	0.78	-2.2
3,758,269	+				+0.6
3,758,269	+				+0.0
3,758,270	-				-2.0
3,758,376	+				+0.9
3,758,405	+				+1.6
3,758,405	+				+0.7
3,758,405	+				-1.8
3,758,405	+				+0.6
3,758,405	+				+0.4
3,758,405	+				+0.0
3,758,405	+				-1.0
3,758,405	+				+0.7
3,758,405	+				+1.2
3,758,405	+				+0.3
3,758,405	+				-0.1
3,758,406	-				-0.2
3,758,406	-				+1.1
3,758,406	-				+0.7
3,758,406	-				-1.0
3,758,406	-				+0.1
3,758,406	-				-0.4
3,758,406	-				+0.6
3,758,406	-				+0.6
3,758,406	-				+0.3
3,758,406	-				-0.4
3,758,406	-				+2.0
3,758,406	-				+1.1
3,758,406	-				+2.0
3,758,406	-				-0.4
3,758,406	-				+2.7
3,758,406	-				+0.6
3,758,406	-				-2.0
3,758,406	-				+1.0
3,758,406	-				+0.0
3,758,406	-				+0.0
3,758,406	-				+0.1
3,758,406	-				+1.0
3,758,406	-				-0.0
3,758,407	+				+0.9
3,758,407	+				+0.8
3,758,407	+				+2.4
3,758,407	+				-1.7
3,758,408	-				-1.4
3,758,408	-				-0.4
3,758,501	+				+1.1
3,758,501	+				+0.4
3,758,501	+				+0.3
3,758,501	+				-0.8
3,758,502	-				+1.7
3,758,502	-				-0.8
3,758,502	-				-1.3
3,758,698	+		Psyr_3133	0.30	+1.3
3,758,699	-		Psyr_3133	0.30	+0.6
3,758,699	-		Psyr_3133	0.30	-1.0
3,759,203	-		Psyr_3133	0.89	+0.3
3,759,278	+				+0.1
3,759,303	+				+0.2
3,759,304	-				+0.4
3,759,304	-				-0.0