Experiment: Def Phosphomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1237 and Psest_1238 are separated by 68 nucleotides Psest_1238 and Psest_1239 are separated by 97 nucleotides Psest_1239 and Psest_1240 are separated by 496 nucleotides
Psest_1237: Psest_1237 - Predicted permeases, at 1,346,403 to 1,347,464
_1237
Psest_1238: Psest_1238 - Predicted membrane protein/domain, at 1,347,533 to 1,348,030
_1238
Psest_1239: Psest_1239 - Cold shock proteins, at 1,348,128 to 1,348,340
_1239
Psest_1240: Psest_1240 - tRNA_Leu_CAA, at 1,348,837 to 1,348,923
_1240
Position (kb)
1347
1348
1349 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1347.481 kb on + strand at 1347.481 kb on + strand at 1347.481 kb on + strand at 1347.481 kb on + strand at 1347.481 kb on + strand at 1347.481 kb on + strand at 1347.481 kb on + strand at 1347.482 kb on - strand at 1347.535 kb on - strand at 1347.631 kb on - strand, within Psest_1238 at 1347.692 kb on + strand, within Psest_1238 at 1347.879 kb on + strand, within Psest_1238 at 1347.879 kb on + strand, within Psest_1238 at 1347.879 kb on + strand, within Psest_1238 at 1347.880 kb on - strand, within Psest_1238 at 1347.880 kb on - strand, within Psest_1238 at 1347.880 kb on - strand, within Psest_1238 at 1347.880 kb on - strand, within Psest_1238 at 1347.880 kb on - strand, within Psest_1238 at 1347.893 kb on + strand, within Psest_1238 at 1347.893 kb on + strand, within Psest_1238 at 1347.894 kb on - strand, within Psest_1238 at 1347.954 kb on + strand, within Psest_1238 at 1347.954 kb on + strand, within Psest_1238 at 1347.954 kb on + strand, within Psest_1238 at 1347.954 kb on + strand, within Psest_1238 at 1347.955 kb on - strand, within Psest_1238 at 1347.955 kb on - strand, within Psest_1238 at 1347.955 kb on - strand, within Psest_1238 at 1347.955 kb on - strand, within Psest_1238 at 1348.046 kb on - strand at 1348.046 kb on - strand at 1348.065 kb on + strand at 1348.348 kb on + strand at 1348.349 kb on - strand at 1348.349 kb on - strand at 1348.367 kb on + strand at 1348.367 kb on + strand at 1348.367 kb on + strand at 1348.368 kb on - strand at 1348.383 kb on + strand at 1348.414 kb on - strand at 1348.448 kb on + strand at 1348.449 kb on - strand at 1348.449 kb on - strand at 1348.449 kb on - strand at 1348.449 kb on - strand at 1348.449 kb on - strand at 1348.449 kb on - strand at 1348.449 kb on - strand at 1348.503 kb on + strand at 1348.503 kb on + strand at 1348.503 kb on + strand at 1348.503 kb on + strand at 1348.694 kb on - strand at 1348.694 kb on - strand at 1348.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Phosphomycin 0.125 mg/ml remove 1,347,481 + -0.3 1,347,481 + -0.2 1,347,481 + -1.2 1,347,481 + +2.7 1,347,481 + -0.9 1,347,481 + -0.5 1,347,481 + -0.2 1,347,482 - +1.7 1,347,535 - +0.0 1,347,631 - Psest_1238 0.20 -1.4 1,347,692 + Psest_1238 0.32 -1.6 1,347,879 + Psest_1238 0.69 -2.2 1,347,879 + Psest_1238 0.69 -0.8 1,347,879 + Psest_1238 0.69 -1.1 1,347,880 - Psest_1238 0.70 -0.7 1,347,880 - Psest_1238 0.70 -1.1 1,347,880 - Psest_1238 0.70 -0.4 1,347,880 - Psest_1238 0.70 -0.5 1,347,880 - Psest_1238 0.70 -0.0 1,347,893 + Psest_1238 0.72 -0.8 1,347,893 + Psest_1238 0.72 -0.8 1,347,894 - Psest_1238 0.72 -1.3 1,347,954 + Psest_1238 0.85 -0.1 1,347,954 + Psest_1238 0.85 +0.1 1,347,954 + Psest_1238 0.85 -0.8 1,347,954 + Psest_1238 0.85 -1.9 1,347,955 - Psest_1238 0.85 -2.4 1,347,955 - Psest_1238 0.85 -2.7 1,347,955 - Psest_1238 0.85 -1.3 1,347,955 - Psest_1238 0.85 -1.0 1,348,046 - +0.3 1,348,046 - -0.1 1,348,065 + +0.1 1,348,348 + +0.1 1,348,349 - -0.7 1,348,349 - +0.4 1,348,367 + +0.8 1,348,367 + +0.2 1,348,367 + -0.1 1,348,368 - +0.1 1,348,383 + +0.2 1,348,414 - +0.8 1,348,448 + +0.7 1,348,449 - +0.3 1,348,449 - -0.7 1,348,449 - -1.0 1,348,449 - +0.4 1,348,449 - -0.1 1,348,449 - +0.0 1,348,449 - +0.5 1,348,503 + +0.7 1,348,503 + -0.3 1,348,503 + +0.5 1,348,503 + -1.1 1,348,694 - +0.1 1,348,694 - -1.8 1,348,814 - +0.1
Or see this region's nucleotide sequence