Strain Fitness in Pseudomonas sp. RS175 around PFR28_04448

Experiment: methyl-trans-p-coumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl-trans-p-coumarate (C)
5,063,405	+		PFR28_04447	0.77	+0.8
5,063,486	+		PFR28_04447	0.80	-1.9
5,063,487	-		PFR28_04447	0.80	-0.1
5,063,487	-		PFR28_04447	0.80	-0.1
5,063,487	-		PFR28_04447	0.80	-0.1
5,063,513	+		PFR28_04447	0.81	-1.1
5,063,513	+		PFR28_04447	0.81	-0.7
5,063,514	-		PFR28_04447	0.81	+0.1
5,063,514	-		PFR28_04447	0.81	-0.4
5,063,514	-		PFR28_04447	0.81	+2.4
5,063,534	+		PFR28_04447	0.81	-0.4
5,063,535	-		PFR28_04447	0.81	+0.4
5,063,535	-		PFR28_04447	0.81	-1.5
5,063,588	+		PFR28_04447	0.83	-1.5
5,063,588	+		PFR28_04447	0.83	-0.9
5,063,588	+		PFR28_04447	0.83	+0.8
5,063,588	+		PFR28_04447	0.83	-0.5
5,063,589	-		PFR28_04447	0.83	-1.9
5,063,589	-		PFR28_04447	0.83	+1.2
5,063,589	-		PFR28_04447	0.83	-0.9
5,063,589	-		PFR28_04447	0.83	-1.1
5,063,589	-		PFR28_04447	0.83	-0.1
5,063,589	-		PFR28_04447	0.83	-2.2
5,063,589	-		PFR28_04447	0.83	-0.2
5,063,589	-		PFR28_04447	0.83	-0.1
5,063,747	+		PFR28_04447	0.88	-0.7
5,063,775	+		PFR28_04447	0.89	-2.4
5,063,777	+		PFR28_04447	0.89	-0.1
5,063,777	+		PFR28_04447	0.89	+1.1
5,063,777	+		PFR28_04447	0.89	+1.1
5,063,777	+		PFR28_04447	0.89	-0.5
5,063,777	+		PFR28_04447	0.89	-0.7
5,063,777	+		PFR28_04447	0.89	-0.7
5,063,778	-		PFR28_04447	0.89	-0.3
5,063,778	-		PFR28_04447	0.89	-2.9
5,063,778	-		PFR28_04447	0.89	+0.1
5,063,778	-		PFR28_04447	0.89	-1.1
5,063,843	+				-3.5
5,063,843	+				-1.3
5,063,844	-				-0.2
5,063,844	-				+0.3
5,063,844	-				-2.0
5,063,858	+				+0.4
5,063,858	+				-0.7
5,063,858	+				+0.4
5,063,858	+				-0.6
5,063,858	+				-0.7
5,063,858	+				-0.2
5,063,858	+				+0.9
5,063,858	+				-0.1
5,063,858	+				+0.8
5,063,858	+				+0.2
5,063,858	+				+0.8
5,063,858	+				-1.7
5,063,858	+				+0.6
5,063,858	+				+0.6
5,063,858	+				+0.6
5,063,859	-				-0.9
5,063,859	-				-0.3
5,063,859	-				+1.1
5,063,859	-				+0.2
5,063,859	-				+0.4
5,063,859	-				+1.7
5,063,859	-				-0.0
5,063,859	-				-0.7
5,063,859	-				+1.1
5,063,859	-				+0.3
5,063,859	-				-0.1
5,063,859	-				+0.5
5,063,859	-				-0.1
5,063,859	-				-0.6
5,063,859	-				-0.9
5,063,861	+				+0.5
5,063,861	+				-0.6
5,063,861	+				-0.6
5,063,861	+				-0.2
5,063,862	-				-1.5
5,063,862	-				+0.1
5,063,862	-				-1.5
5,063,862	-				+0.5
5,064,035	+				-0.2
5,064,035	+				-0.5
5,064,036	-				+1.2
5,064,036	-				-0.5
5,064,036	-				+0.1
5,064,081	-				-0.2
5,064,143	+				-2.3
5,064,143	+				-1.6
5,064,277	+		PFR28_04448	0.24	-1.3
5,064,277	+		PFR28_04448	0.24	-1.2
5,064,277	+		PFR28_04448	0.24	-0.8
5,064,277	+		PFR28_04448	0.24	-0.5
5,064,277	+		PFR28_04448	0.24	-2.3
5,064,277	+		PFR28_04448	0.24	-3.9
5,064,277	+		PFR28_04448	0.24	-2.1
5,064,278	-		PFR28_04448	0.25	-0.5
5,064,278	-		PFR28_04448	0.25	-2.7
5,064,278	-		PFR28_04448	0.25	-1.7
5,064,424	+		PFR28_04448	0.46	-2.4
5,064,424	+		PFR28_04448	0.46	-3.3
5,064,424	+		PFR28_04448	0.46	-1.5
5,064,424	+		PFR28_04448	0.46	-0.9
5,064,424	+		PFR28_04448	0.46	-0.1
5,064,425	-		PFR28_04448	0.46	-1.2
5,064,425	-		PFR28_04448	0.46	+0.8
5,064,425	-		PFR28_04448	0.46	-0.5
5,064,425	-		PFR28_04448	0.46	-2.8
5,064,425	-		PFR28_04448	0.46	-0.6
5,064,472	+		PFR28_04448	0.53	-2.9
5,064,472	+		PFR28_04448	0.53	+0.7
5,064,472	+		PFR28_04448	0.53	-0.8
5,064,473	-		PFR28_04448	0.53	+0.2
5,064,473	-		PFR28_04448	0.53	-3.5
5,064,473	-		PFR28_04448	0.53	-2.8
5,064,473	-		PFR28_04448	0.53	-0.4
5,064,473	-		PFR28_04448	0.53	-0.7
5,064,628	+		PFR28_04448	0.76	-2.7
5,064,628	+		PFR28_04448	0.76	-2.1
5,064,628	+		PFR28_04448	0.76	-1.8
5,064,628	+		PFR28_04448	0.76	-1.4
5,064,628	+		PFR28_04448	0.76	-0.7
5,064,628	+		PFR28_04448	0.76	+0.1
5,064,628	+		PFR28_04448	0.76	-1.4
5,064,628	+		PFR28_04448	0.76	-1.8
5,064,628	+		PFR28_04448	0.76	-1.3
5,064,629	-		PFR28_04448	0.76	+1.1
5,064,629	-		PFR28_04448	0.76	-0.2
5,064,629	-		PFR28_04448	0.76	-1.8
5,064,629	-		PFR28_04448	0.76	-0.3
5,064,629	-		PFR28_04448	0.76	-0.4
5,064,691	+		PFR28_04448	0.86	-0.9
5,064,691	+		PFR28_04448	0.86	-1.8
5,064,691	+		PFR28_04448	0.86	-0.8
5,064,692	-		PFR28_04448	0.86	-1.5
5,064,692	-		PFR28_04448	0.86	+0.1
5,064,844	+				+0.2
5,064,844	+				-0.5
5,064,844	+				-0.4
5,064,844	+				-0.1
5,064,844	+				-2.1
5,064,844	+				-1.3
5,064,844	+				-0.2
5,064,844	+				-1.3
5,064,845	-				-0.3
5,064,845	-				-0.5
5,064,845	-				-1.0
5,064,845	-				-0.1
5,064,845	-				-0.9
5,064,845	-				+0.3
5,064,845	-				-3.1
5,065,240	+		PFR28_04449	0.61	-2.0
5,065,241	-		PFR28_04449	0.61	+2.4
5,065,299	+		PFR28_04449	0.70	-1.8
5,065,342	+		PFR28_04449	0.76	-0.8
5,065,343	-		PFR28_04449	0.76	-0.5
5,065,343	-		PFR28_04449	0.76	-2.5
5,065,477	+				-1.1
5,065,477	+				-1.5
5,065,478	-				-1.0
5,065,478	-				-2.1
5,065,478	-				+2.1
5,065,490	+				-2.4
5,065,490	+				-3.1
5,065,490	+				-4.3
5,065,490	+				-1.7
5,065,490	+				-0.3
5,065,491	-				-0.3
5,065,491	-				-0.9
5,065,491	-				-1.5
5,065,491	-				-1.4
5,065,572	+				+0.5
5,065,572	+				+1.0
5,065,572	+				-0.4
5,065,573	-				+1.8