Strain Fitness in Pseudomonas sp. RS175 around PFR28_02820

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,293,235	+		PFR28_02819	0.27	+1.0
3,293,235	+		PFR28_02819	0.27	+1.2
3,293,340	+		PFR28_02819	0.38	-0.7
3,293,340	+		PFR28_02819	0.38	+0.6
3,293,340	+		PFR28_02819	0.38	-1.1
3,293,341	-		PFR28_02819	0.38	-0.3
3,293,488	+		PFR28_02819	0.53	-0.1
3,293,926	-				+0.7
3,293,973	+				-0.6
3,293,973	+				+0.1
3,293,974	-				-0.3
3,293,974	-				-0.9
3,293,974	-				-1.1
3,294,780	+		PFR28_02820	0.57	-1.3
3,294,781	-		PFR28_02820	0.57	-0.6
3,294,781	-		PFR28_02820	0.57	-0.1
3,294,781	-		PFR28_02820	0.57	-0.5
3,294,781	-		PFR28_02820	0.57	-1.2
3,294,873	+		PFR28_02820	0.65	-0.9
3,294,873	+		PFR28_02820	0.65	-0.9
3,294,873	+		PFR28_02820	0.65	-1.1
3,294,873	+		PFR28_02820	0.65	-2.4
3,294,873	+		PFR28_02820	0.65	-3.1
3,294,873	+		PFR28_02820	0.65	+1.6
3,294,873	+		PFR28_02820	0.65	+0.4
3,294,873	+		PFR28_02820	0.65	-2.7
3,294,873	+		PFR28_02820	0.65	-1.1
3,294,873	+		PFR28_02820	0.65	-1.1
3,294,873	+		PFR28_02820	0.65	-0.1
3,294,874	-		PFR28_02820	0.65	-0.4
3,294,874	-		PFR28_02820	0.65	-1.2
3,294,874	-		PFR28_02820	0.65	-1.8
3,294,874	-		PFR28_02820	0.65	-1.7
3,294,874	-		PFR28_02820	0.65	-0.8
3,294,874	-		PFR28_02820	0.65	-1.6
3,295,032	+		PFR28_02820	0.79	+0.5
3,295,033	-		PFR28_02820	0.79	-2.1
3,295,090	-		PFR28_02820	0.85	+1.1
3,295,250	+				-1.1
3,295,251	-				-1.9
3,295,251	-				-1.6
3,295,268	+				-0.3
3,295,268	+				-0.9
3,295,268	+				-1.9
3,295,268	+				+1.2
3,295,268	+				-1.6
3,295,268	+				-1.7
3,295,268	+				-1.1
3,295,268	+				-0.8
3,295,268	+				-0.6
3,295,268	+				-0.5
3,295,268	+				-1.3
3,295,268	+				-0.4
3,295,269	-				-1.2
3,295,269	-				-0.9
3,295,269	-				+1.0
3,295,269	-				+1.0
3,295,269	-				-1.3
3,295,269	-				+0.7
3,295,269	-				+0.4
3,295,269	-				-2.3
3,295,269	-				+0.1
3,295,269	-				-2.6
3,295,269	-				-0.3
3,295,269	-				-0.8
3,295,274	+				-0.0
3,295,274	+				-0.8
3,295,274	+				-0.6
3,295,275	-				+0.6
3,295,275	-				-0.3
3,295,275	-				-1.4
3,295,275	-				+0.7
3,295,275	-				+0.9
3,295,275	-				-1.4
3,295,275	-				+1.5
3,295,275	-				-2.3
3,295,275	-				-1.1
3,295,276	+				-0.3
3,295,276	+				+0.6
3,295,276	+				-0.5
3,295,276	+				+0.2
3,295,277	-				+0.1
3,295,375	+				-2.9
3,295,375	+				-1.3
3,295,375	+				-1.6
3,295,375	+				-1.8
3,295,569	+		PFR28_02821	0.23	-3.4
3,295,569	+		PFR28_02821	0.23	-4.2
3,295,569	+		PFR28_02821	0.23	-1.3
3,295,569	+		PFR28_02821	0.23	-0.8
3,295,570	-		PFR28_02821	0.23	+1.2
3,295,570	-		PFR28_02821	0.23	-2.3
3,295,570	-		PFR28_02821	0.23	-2.0
3,295,570	-		PFR28_02821	0.23	-4.3
3,295,570	-		PFR28_02821	0.23	-3.3
3,295,570	-		PFR28_02821	0.23	-2.8
3,295,570	-		PFR28_02821	0.23	-2.2
3,295,570	-		PFR28_02821	0.23	-3.4
3,295,570	-		PFR28_02821	0.23	-4.3
3,295,666	+		PFR28_02821	0.32	-4.7
3,295,666	+		PFR28_02821	0.32	-2.1
3,295,666	+		PFR28_02821	0.32	-3.6
3,295,666	+		PFR28_02821	0.32	-4.1
3,295,667	-		PFR28_02821	0.32	-2.2
3,295,667	-		PFR28_02821	0.32	-2.9
3,295,667	-		PFR28_02821	0.32	-4.0
3,295,667	-		PFR28_02821	0.32	-3.6
3,295,667	-		PFR28_02821	0.32	-3.9
3,295,734	+		PFR28_02821	0.39	-4.6
3,295,734	+		PFR28_02821	0.39	-3.1
3,295,734	+		PFR28_02821	0.39	-1.9
3,295,734	+		PFR28_02821	0.39	-4.7
3,295,734	+		PFR28_02821	0.39	-0.4
3,295,734	+		PFR28_02821	0.39	-2.6
3,295,734	+		PFR28_02821	0.39	-2.2
3,295,734	+		PFR28_02821	0.39	-3.2
3,295,734	+		PFR28_02821	0.39	-4.8
3,295,734	+		PFR28_02821	0.39	-4.3
3,295,734	+		PFR28_02821	0.39	-3.1
3,295,734	+		PFR28_02821	0.39	-3.8
3,295,734	+		PFR28_02821	0.39	-1.6
3,295,734	+		PFR28_02821	0.39	-0.8
3,295,734	+		PFR28_02821	0.39	-4.2
3,295,734	+		PFR28_02821	0.39	-4.4
3,295,734	+		PFR28_02821	0.39	-3.8
3,295,734	+		PFR28_02821	0.39	-3.7
3,295,734	+		PFR28_02821	0.39	-1.9
3,295,734	+		PFR28_02821	0.39	-3.0
3,295,734	+		PFR28_02821	0.39	-3.1
3,295,734	+		PFR28_02821	0.39	-4.5
3,295,735	-		PFR28_02821	0.39	-1.8
3,295,735	-		PFR28_02821	0.39	-3.5
3,295,735	-		PFR28_02821	0.39	-2.9
3,295,735	-		PFR28_02821	0.39	-3.0
3,295,735	-		PFR28_02821	0.39	-2.9
3,295,735	-		PFR28_02821	0.39	-2.2
3,295,735	-		PFR28_02821	0.39	-3.3
3,295,735	-		PFR28_02821	0.39	-2.7
3,295,735	-		PFR28_02821	0.39	-3.3
3,295,735	-		PFR28_02821	0.39	-5.1
3,295,735	-		PFR28_02821	0.39	-4.8
3,295,735	-		PFR28_02821	0.39	-5.5
3,295,735	-		PFR28_02821	0.39	-5.0
3,295,735	-		PFR28_02821	0.39	-3.2
3,295,735	-		PFR28_02821	0.39	-2.1
3,295,738	+		PFR28_02821	0.39	-3.8
3,295,738	+		PFR28_02821	0.39	-2.7
3,295,738	+		PFR28_02821	0.39	-2.3
3,295,738	+		PFR28_02821	0.39	-3.7
3,295,738	+		PFR28_02821	0.39	-3.7
3,295,738	+		PFR28_02821	0.39	-3.9
3,295,738	+		PFR28_02821	0.39	-3.4
3,295,738	+		PFR28_02821	0.39	-3.1
3,295,739	-		PFR28_02821	0.39	-1.2
3,295,739	-		PFR28_02821	0.39	-1.3
3,295,739	-		PFR28_02821	0.39	-2.4
3,295,739	-		PFR28_02821	0.39	-2.8
3,295,739	-		PFR28_02821	0.39	-3.5
3,295,739	-		PFR28_02821	0.39	-2.9
3,295,739	-		PFR28_02821	0.39	-2.3
3,295,739	-		PFR28_02821	0.39	-2.5
3,295,739	-		PFR28_02821	0.39	-4.3
3,295,739	-		PFR28_02821	0.39	-2.5
3,295,739	-		PFR28_02821	0.39	-4.4
3,295,739	-		PFR28_02821	0.39	-3.8
3,295,739	-		PFR28_02821	0.39	-4.8
3,295,782	-		PFR28_02821	0.43	-0.3
3,295,909	-		PFR28_02821	0.55	-2.8
3,295,909	-		PFR28_02821	0.55	-3.9
3,295,923	+		PFR28_02821	0.56	-4.2
3,295,923	+		PFR28_02821	0.56	-3.5
3,295,923	+		PFR28_02821	0.56	-2.5
3,295,924	-		PFR28_02821	0.56	-4.3
3,295,924	-		PFR28_02821	0.56	-4.1
3,295,977	+		PFR28_02821	0.61	-2.5
3,295,977	+		PFR28_02821	0.61	+0.2
3,295,977	+		PFR28_02821	0.61	+1.2
3,295,977	+		PFR28_02821	0.61	-3.3
3,295,978	-		PFR28_02821	0.61	-4.4
3,295,978	-		PFR28_02821	0.61	-4.1
3,295,978	-		PFR28_02821	0.61	-2.8
3,295,978	-		PFR28_02821	0.61	-4.8
3,295,978	-		PFR28_02821	0.61	-4.0
3,295,981	+		PFR28_02821	0.61	-4.8
3,295,982	-		PFR28_02821	0.61	-3.4
3,295,982	-		PFR28_02821	0.61	-4.5
3,295,982	-		PFR28_02821	0.61	-4.2