Strain Fitness in Pseudomonas sp. RS175 around PFR28_00247

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00246 and PFR28_00247 are separated by 178 nucleotidesPFR28_00247 and PFR28_00248 are separated by 138 nucleotides PFR28_00246: PFR28_00246 - Protoheme IX farnesyltransferase, at 273,612 to 274,499 _00246 PFR28_00247: PFR28_00247 - hypothetical protein, at 274,678 to 275,382 _00247 PFR28_00248: PFR28_00248 - hypothetical protein, at 275,521 to 276,264 _00248 Position (kb) 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 273.915 kb on + strand, within PFR28_00246at 273.915 kb on + strand, within PFR28_00246at 273.915 kb on + strand, within PFR28_00246at 273.969 kb on + strand, within PFR28_00246at 273.969 kb on + strand, within PFR28_00246at 273.970 kb on - strand, within PFR28_00246at 273.970 kb on - strand, within PFR28_00246at 273.970 kb on - strand, within PFR28_00246at 273.982 kb on - strand, within PFR28_00246at 273.982 kb on - strand, within PFR28_00246at 273.990 kb on + strand, within PFR28_00246at 273.991 kb on - strand, within PFR28_00246at 273.991 kb on - strand, within PFR28_00246at 274.062 kb on + strand, within PFR28_00246at 274.062 kb on + strand, within PFR28_00246at 274.063 kb on - strand, within PFR28_00246at 274.144 kb on - strand, within PFR28_00246at 274.144 kb on - strand, within PFR28_00246at 274.144 kb on - strand, within PFR28_00246at 274.144 kb on - strand, within PFR28_00246at 274.144 kb on - strand, within PFR28_00246at 274.173 kb on + strand, within PFR28_00246at 274.173 kb on + strand, within PFR28_00246at 274.173 kb on + strand, within PFR28_00246at 274.174 kb on - strand, within PFR28_00246at 274.174 kb on - strand, within PFR28_00246at 274.245 kb on + strand, within PFR28_00246at 274.245 kb on + strand, within PFR28_00246at 274.245 kb on + strand, within PFR28_00246at 274.246 kb on - strand, within PFR28_00246at 274.308 kb on + strand, within PFR28_00246at 274.308 kb on + strand, within PFR28_00246at 274.309 kb on - strand, within PFR28_00246at 274.309 kb on - strand, within PFR28_00246at 274.309 kb on - strand, within PFR28_00246at 274.338 kb on + strand, within PFR28_00246at 274.338 kb on + strand, within PFR28_00246at 274.339 kb on - strand, within PFR28_00246at 274.339 kb on - strand, within PFR28_00246at 274.339 kb on - strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.347 kb on + strand, within PFR28_00246at 274.348 kb on - strand, within PFR28_00246at 274.348 kb on - strand, within PFR28_00246at 274.366 kb on - strand, within PFR28_00246at 274.366 kb on - strand, within PFR28_00246at 274.488 kb on + strandat 274.488 kb on + strandat 274.488 kb on + strandat 274.488 kb on + strandat 274.488 kb on + strandat 274.489 kb on - strandat 274.489 kb on - strandat 274.489 kb on - strandat 274.497 kb on + strandat 274.497 kb on + strandat 274.497 kb on + strandat 274.497 kb on + strandat 274.497 kb on + strandat 274.497 kb on + strandat 274.497 kb on + strandat 274.498 kb on - strandat 274.498 kb on - strandat 274.513 kb on + strandat 274.514 kb on - strandat 274.679 kb on + strandat 274.679 kb on + strandat 274.679 kb on + strandat 274.680 kb on - strandat 274.680 kb on - strandat 274.697 kb on + strandat 275.027 kb on + strand, within PFR28_00247at 275.027 kb on + strand, within PFR28_00247at 275.060 kb on + strand, within PFR28_00247at 275.060 kb on + strand, within PFR28_00247at 275.060 kb on + strand, within PFR28_00247at 275.060 kb on + strand, within PFR28_00247at 275.061 kb on - strand, within PFR28_00247at 275.061 kb on - strand, within PFR28_00247at 275.168 kb on + strand, within PFR28_00247at 275.168 kb on + strand, within PFR28_00247at 275.354 kb on - strandat 275.394 kb on + strandat 275.394 kb on + strandat 275.395 kb on - strandat 275.395 kb on - strandat 275.395 kb on - strandat 275.428 kb on - strandat 275.428 kb on - strandat 275.447 kb on + strandat 275.452 kb on + strandat 275.452 kb on + strandat 275.452 kb on + strandat 275.453 kb on - strandat 275.453 kb on - strandat 275.669 kb on + strand, within PFR28_00248at 275.669 kb on + strand, within PFR28_00248at 275.672 kb on + strand, within PFR28_00248at 275.672 kb on + strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.673 kb on - strand, within PFR28_00248at 275.702 kb on + strand, within PFR28_00248at 275.703 kb on - strand, within PFR28_00248at 275.787 kb on - strand, within PFR28_00248at 275.787 kb on - strand, within PFR28_00248at 275.920 kb on + strand, within PFR28_00248at 275.921 kb on - strand, within PFR28_00248at 276.110 kb on + strand, within PFR28_00248at 276.153 kb on - strand, within PFR28_00248at 276.153 kb on - strand, within PFR28_00248at 276.230 kb on + strandat 276.296 kb on - strandat 276.296 kb on - strandat 276.296 kb on - strandat 276.296 kb on - strandat 276.296 kb on - strandat 276.296 kb on - strandat 276.296 kb on - strandat 276.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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273,915 + PFR28_00246 0.34 +1.7
273,915 + PFR28_00246 0.34 -0.8
273,915 + PFR28_00246 0.34 -1.5
273,969 + PFR28_00246 0.40 -0.6
273,969 + PFR28_00246 0.40 -0.6
273,970 - PFR28_00246 0.40 -1.7
273,970 - PFR28_00246 0.40 +2.3
273,970 - PFR28_00246 0.40 -1.1
273,982 - PFR28_00246 0.42 -0.6
273,982 - PFR28_00246 0.42 -1.1
273,990 + PFR28_00246 0.43 -0.1
273,991 - PFR28_00246 0.43 -0.8
273,991 - PFR28_00246 0.43 +0.4
274,062 + PFR28_00246 0.51 -2.6
274,062 + PFR28_00246 0.51 -0.8
274,063 - PFR28_00246 0.51 +0.9
274,144 - PFR28_00246 0.60 +0.4
274,144 - PFR28_00246 0.60 +0.6
274,144 - PFR28_00246 0.60 +0.7
274,144 - PFR28_00246 0.60 +0.5
274,144 - PFR28_00246 0.60 -1.8
274,173 + PFR28_00246 0.63 +0.0
274,173 + PFR28_00246 0.63 -0.6
274,173 + PFR28_00246 0.63 +0.1
274,174 - PFR28_00246 0.63 +0.0
274,174 - PFR28_00246 0.63 -0.4
274,245 + PFR28_00246 0.71 +0.1
274,245 + PFR28_00246 0.71 +0.1
274,245 + PFR28_00246 0.71 -0.1
274,246 - PFR28_00246 0.71 +0.5
274,308 + PFR28_00246 0.78 -0.0
274,308 + PFR28_00246 0.78 -0.4
274,309 - PFR28_00246 0.78 -0.1
274,309 - PFR28_00246 0.78 -0.1
274,309 - PFR28_00246 0.78 -2.8
274,338 + PFR28_00246 0.82 +0.0
274,338 + PFR28_00246 0.82 -0.1
274,339 - PFR28_00246 0.82 -0.1
274,339 - PFR28_00246 0.82 +1.0
274,339 - PFR28_00246 0.82 -0.4
274,347 + PFR28_00246 0.83 +0.1
274,347 + PFR28_00246 0.83 -0.0
274,347 + PFR28_00246 0.83 -0.1
274,347 + PFR28_00246 0.83 -1.3
274,347 + PFR28_00246 0.83 +0.0
274,347 + PFR28_00246 0.83 -0.3
274,347 + PFR28_00246 0.83 +0.1
274,348 - PFR28_00246 0.83 -1.6
274,348 - PFR28_00246 0.83 -0.8
274,366 - PFR28_00246 0.85 -0.5
274,366 - PFR28_00246 0.85 -0.3
274,488 + -3.0
274,488 + +1.1
274,488 + -0.2
274,488 + +1.1
274,488 + +0.7
274,489 - +0.4
274,489 - -1.3
274,489 - -0.4
274,497 + +1.2
274,497 + +0.1
274,497 + -0.1
274,497 + -0.2
274,497 + -0.3
274,497 + +0.2
274,497 + -1.0
274,498 - -0.3
274,498 - -0.1
274,513 + -0.8
274,514 - -0.2
274,679 + -1.4
274,679 + +0.9
274,679 + -0.4
274,680 - +0.3
274,680 - +0.8
274,697 + +0.7
275,027 + PFR28_00247 0.50 +0.1
275,027 + PFR28_00247 0.50 -1.7
275,060 + PFR28_00247 0.54 +0.0
275,060 + PFR28_00247 0.54 +1.2
275,060 + PFR28_00247 0.54 -0.8
275,060 + PFR28_00247 0.54 -0.9
275,061 - PFR28_00247 0.54 -0.3
275,061 - PFR28_00247 0.54 -1.3
275,168 + PFR28_00247 0.70 -0.5
275,168 + PFR28_00247 0.70 -1.8
275,354 - +0.1
275,394 + +0.1
275,394 + +0.2
275,395 - +0.3
275,395 - -0.1
275,395 - +1.3
275,428 - +0.5
275,428 - -0.9
275,447 + +0.2
275,452 + +0.5
275,452 + -0.7
275,452 + +1.0
275,453 - +1.3
275,453 - +0.3
275,669 + PFR28_00248 0.20 +0.4
275,669 + PFR28_00248 0.20 -0.1
275,672 + PFR28_00248 0.20 -0.6
275,672 + PFR28_00248 0.20 -1.0
275,673 - PFR28_00248 0.20 +0.6
275,673 - PFR28_00248 0.20 -0.5
275,673 - PFR28_00248 0.20 -1.4
275,673 - PFR28_00248 0.20 +1.1
275,673 - PFR28_00248 0.20 -2.1
275,673 - PFR28_00248 0.20 +0.1
275,673 - PFR28_00248 0.20 -0.4
275,702 + PFR28_00248 0.24 +1.1
275,703 - PFR28_00248 0.24 +0.4
275,787 - PFR28_00248 0.36 +0.8
275,787 - PFR28_00248 0.36 +1.3
275,920 + PFR28_00248 0.54 -1.8
275,921 - PFR28_00248 0.54 -1.3
276,110 + PFR28_00248 0.79 +0.3
276,153 - PFR28_00248 0.85 +1.1
276,153 - PFR28_00248 0.85 +1.2
276,230 + +0.8
276,296 - +1.0
276,296 - +0.0
276,296 - -0.7
276,296 - -0.6
276,296 - +0.2
276,296 - +1.1
276,296 - -0.6
276,366 + +0.1

Or see this region's nucleotide sequence