Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3530c

Experiment: 7H9 with nitrite 3 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 3 mM; pH 5.5
3,966,048	+		Rv3529c	0.14	-1.6
3,966,049	-		Rv3529c	0.14	-1.1
3,966,331	+		Rv3529c	0.39	-0.6
3,966,479	+		Rv3529c	0.52	+0.2
3,966,479	+		Rv3529c	0.52	-0.5
3,966,479	+		Rv3529c	0.52	+0.1
3,966,899	+		Rv3529c	0.88	-0.1
3,967,459	-		Rv3530c	0.54	-1.9
3,967,577	-		Rv3530c	0.69	-1.1
3,967,609	-		Rv3530c	0.73	-0.3
3,967,609	-		Rv3530c	0.73	-1.1
3,967,902	+				+0.1
3,968,139	+		Rv3531c	0.29	-0.3
3,968,154	+		Rv3531c	0.30	-0.0
3,968,180	+		Rv3531c	0.32	+0.2
3,968,180	+		Rv3531c	0.32	-0.2
3,968,326	-		Rv3531c	0.45	-0.5
3,968,345	+		Rv3531c	0.47	-0.4
3,968,511	-		Rv3531c	0.62	-0.0
3,968,511	-		Rv3531c	0.62	+0.1
3,968,611	+		Rv3531c	0.70	-2.0
3,968,612	-		Rv3531c	0.70	+0.1
3,968,614	-		Rv3531c	0.71	+0.2
3,968,685	+		Rv3531c	0.77	-0.2
3,968,797	-		Rv3531c	0.87	+1.2