Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3817

Experiment: 7H9 with hypochlorite 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with hypochlorite 0.4 vol%
4,280,649	+		Rv3815c	0.81	+0.8
4,280,649	+		Rv3815c	0.81	+0.3
4,280,650	-		Rv3815c	0.82	-0.7
4,280,650	-		Rv3815c	0.82	-0.5
4,280,650	-		Rv3815c	0.82	-0.5
4,280,650	-		Rv3815c	0.82	+0.0
4,280,650	-		Rv3815c	0.82	+0.5
4,280,650	-		Rv3815c	0.82	+0.3
4,280,666	-		Rv3815c	0.84	+0.2
4,280,712	+		Rv3815c	0.90	+1.8
4,280,713	-				+0.0
4,280,845	+				-0.8
4,280,846	-				-0.2
4,280,846	-				-0.7
4,280,950	-		Rv3816c	0.20	-1.1
4,281,559	-				+0.2
4,281,585	-				-1.0
4,281,861	-		Rv3817	0.28	-0.9
4,282,428	-				-0.8
4,282,444	+				-2.1
4,282,537	-				+0.8
4,282,606	-		Rv3818	0.10	-0.3
4,282,624	+		Rv3818	0.11	-2.3
4,282,964	+		Rv3818	0.33	-0.3
4,282,964	+		Rv3818	0.33	-0.8
4,282,965	-		Rv3818	0.33	+1.8
4,282,965	-		Rv3818	0.33	-2.6
4,283,005	-		Rv3818	0.36	-0.5
4,283,080	-		Rv3818	0.41	-0.6
4,283,138	-		Rv3818	0.44	-0.5
4,283,186	+		Rv3818	0.48	-0.5