Experiment: 7H9 with Sisomicin 0.07 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0280 and Rv0281 are separated by 23 nucleotides Rv0281 and Rv0282 are separated by 223 nucleotides
Rv0280: Rv0280 - PPE family protein PPE3, at 339,364 to 340,974
Rv0280
Rv0281: Rv0281 - Possible S-adenosylmethionine-dependent methyltransferase, at 340,998 to 341,906
Rv0281
Rv0282: Rv0282 - ESX conserved component EccA3. ESX-3 type VII secretion system protein., at 342,130 to 344,025
Rv0282
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 340.054 kb on + strand, within Rv0280 at 340.056 kb on + strand, within Rv0280 at 340.182 kb on - strand, within Rv0280 at 340.182 kb on - strand, within Rv0280 at 340.182 kb on - strand, within Rv0280 at 340.192 kb on + strand, within Rv0280 at 340.339 kb on - strand, within Rv0280 at 340.350 kb on - strand, within Rv0280 at 340.525 kb on + strand, within Rv0280 at 340.526 kb on - strand, within Rv0280 at 340.531 kb on + strand, within Rv0280 at 340.646 kb on + strand, within Rv0280 at 340.646 kb on + strand, within Rv0280 at 340.647 kb on - strand, within Rv0280 at 340.697 kb on - strand, within Rv0280 at 340.710 kb on + strand, within Rv0280 at 340.710 kb on + strand, within Rv0280 at 340.710 kb on + strand, within Rv0280 at 340.710 kb on + strand, within Rv0280 at 340.716 kb on + strand, within Rv0280 at 340.717 kb on - strand, within Rv0280 at 341.015 kb on + strand at 341.116 kb on - strand, within Rv0281 at 341.247 kb on + strand, within Rv0281 at 341.248 kb on - strand, within Rv0281 at 341.248 kb on - strand, within Rv0281 at 341.260 kb on - strand, within Rv0281 at 341.260 kb on - strand, within Rv0281 at 341.550 kb on + strand, within Rv0281 at 341.666 kb on + strand, within Rv0281 at 341.734 kb on - strand, within Rv0281 at 341.812 kb on - strand, within Rv0281 at 341.968 kb on + strand at 341.969 kb on - strand at 341.988 kb on - strand at 342.004 kb on - strand at 342.032 kb on - strand at 342.032 kb on - strand at 342.140 kb on + strand at 342.215 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sisomicin 0.07 mM remove 340,054 + Rv0280 0.43 -2.1 340,056 + Rv0280 0.43 -0.3 340,182 - Rv0280 0.51 +1.0 340,182 - Rv0280 0.51 +1.1 340,182 - Rv0280 0.51 -0.6 340,192 + Rv0280 0.51 -0.4 340,339 - Rv0280 0.61 -0.8 340,350 - Rv0280 0.61 +0.1 340,525 + Rv0280 0.72 -0.3 340,526 - Rv0280 0.72 -0.3 340,531 + Rv0280 0.72 -0.3 340,646 + Rv0280 0.80 -1.0 340,646 + Rv0280 0.80 -1.1 340,647 - Rv0280 0.80 -0.7 340,697 - Rv0280 0.83 -1.1 340,710 + Rv0280 0.84 -0.6 340,710 + Rv0280 0.84 -1.9 340,710 + Rv0280 0.84 -2.1 340,710 + Rv0280 0.84 -1.0 340,716 + Rv0280 0.84 +0.7 340,717 - Rv0280 0.84 -0.3 341,015 + +0.4 341,116 - Rv0281 0.13 -0.5 341,247 + Rv0281 0.27 +0.9 341,248 - Rv0281 0.28 +1.7 341,248 - Rv0281 0.28 +0.3 341,260 - Rv0281 0.29 -1.4 341,260 - Rv0281 0.29 -0.3 341,550 + Rv0281 0.61 -0.5 341,666 + Rv0281 0.73 +0.6 341,734 - Rv0281 0.81 +1.0 341,812 - Rv0281 0.90 +1.0 341,968 + -1.2 341,969 - -0.4 341,988 - -0.5 342,004 - -0.8 342,032 - -0.3 342,032 - -1.3 342,140 + -0.4 342,215 + -0.1
Or see this region's nucleotide sequence