Experiment: 7H9 with nitrate 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0594 and Rv0595c are separated by 51 nucleotides Rv0595c and Rv0596c overlap by 4 nucleotides Rv0596c and Rv0597c are separated by 182 nucleotides
Rv0594: Rv0594 - Mce-family protein Mce2F, at 693,237 to 694,787
Rv0594
Rv0595c: Rv0595c - Possible toxin VapC4, at 694,839 to 695,231
Rv0595c
Rv0596c: Rv0596c - Possible antitoxin VapB4, at 695,228 to 695,485
Rv0596c
Rv0597c: Rv0597c - Conserved hypothetical protein, at 695,668 to 696,903
Rv0597c
Position (kb) 694
695
696 Strain fitness (log2 ratio) -1
0
1
2 at 694.133 kb on + strand, within Rv0594 at 694.136 kb on + strand, within Rv0594 at 694.137 kb on - strand, within Rv0594 at 694.279 kb on - strand, within Rv0594 at 694.339 kb on + strand, within Rv0594 at 694.340 kb on - strand, within Rv0594 at 694.395 kb on + strand, within Rv0594 at 694.395 kb on + strand, within Rv0594 at 694.395 kb on + strand, within Rv0594 at 694.396 kb on - strand, within Rv0594 at 694.645 kb on - strand at 694.645 kb on - strand at 694.664 kb on + strand at 694.664 kb on + strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.675 kb on - strand at 694.700 kb on - strand at 694.700 kb on - strand at 694.700 kb on - strand at 694.700 kb on - strand at 694.720 kb on - strand at 694.848 kb on + strand at 694.986 kb on + strand, within Rv0595c at 694.986 kb on + strand, within Rv0595c at 695.022 kb on + strand, within Rv0595c at 695.050 kb on + strand, within Rv0595c at 695.051 kb on - strand, within Rv0595c at 695.223 kb on + strand at 695.223 kb on + strand at 695.556 kb on - strand at 695.789 kb on + strand at 695.789 kb on + strand at 695.794 kb on + strand, within Rv0597c at 695.794 kb on + strand, within Rv0597c at 695.794 kb on + strand, within Rv0597c at 695.984 kb on - strand, within Rv0597c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrate 4 mM remove 694,133 + Rv0594 0.58 -0.5 694,136 + Rv0594 0.58 -0.3 694,137 - Rv0594 0.58 +0.8 694,279 - Rv0594 0.67 +0.3 694,339 + Rv0594 0.71 -0.3 694,340 - Rv0594 0.71 -0.2 694,395 + Rv0594 0.75 -0.2 694,395 + Rv0594 0.75 +0.5 694,395 + Rv0594 0.75 +0.8 694,396 - Rv0594 0.75 +0.4 694,645 - +1.5 694,645 - -0.8 694,664 + +0.8 694,664 + +0.5 694,665 - -0.7 694,665 - -0.2 694,665 - -0.8 694,665 - -0.3 694,665 - -0.7 694,675 - +0.8 694,700 - -1.2 694,700 - +0.8 694,700 - -0.4 694,700 - +0.2 694,720 - -1.5 694,848 + -0.3 694,986 + Rv0595c 0.37 -1.0 694,986 + Rv0595c 0.37 -0.1 695,022 + Rv0595c 0.47 -0.4 695,050 + Rv0595c 0.54 -0.7 695,051 - Rv0595c 0.54 -1.2 695,223 + -0.3 695,223 + +1.8 695,556 - -0.2 695,789 + -0.7 695,789 + -0.3 695,794 + Rv0597c 0.10 -0.3 695,794 + Rv0597c 0.10 -0.8 695,794 + Rv0597c 0.10 +0.0 695,984 - Rv0597c 0.26 -0.4
Or see this region's nucleotide sequence