Experiment: 7H9 with Ramoplanin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0272c and Rv0273c overlap by 4 nucleotides Rv0273c and Rv0274 are separated by 96 nucleotides Rv0274 and Rv0275c overlap by 71 nucleotides
Rv0272c: Rv0272c - Unknown protein, at 328,575 to 329,708
Rv0272c
Rv0273c: Rv0273c - Possible transcriptional regulatory protein, at 329,705 to 330,325
Rv0273c
Rv0274: Rv0274 - Conserved protein, at 330,422 to 331,003
Rv0274
Rv0275c: Rv0275c - Possible transcriptional regulatory protein (possibly TetR-family), at 330,933 to 331,658
Rv0275c
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1
2 at 328.970 kb on + strand, within Rv0272c at 329.239 kb on + strand, within Rv0272c at 329.240 kb on - strand, within Rv0272c at 329.285 kb on + strand, within Rv0272c at 329.515 kb on + strand, within Rv0272c at 329.551 kb on + strand, within Rv0272c at 329.602 kb on + strand at 329.602 kb on + strand at 329.603 kb on - strand at 329.731 kb on - strand at 329.807 kb on - strand, within Rv0273c at 330.036 kb on + strand, within Rv0273c at 330.175 kb on - strand, within Rv0273c at 330.180 kb on + strand, within Rv0273c at 330.180 kb on + strand, within Rv0273c at 330.860 kb on + strand, within Rv0274 at 330.860 kb on + strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.865 kb on - strand, within Rv0274 at 331.080 kb on + strand, within Rv0275c at 331.081 kb on - strand, within Rv0275c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ramoplanin 0.009 mM remove 328,970 + Rv0272c 0.35 -0.6 329,239 + Rv0272c 0.59 +0.2 329,240 - Rv0272c 0.59 +1.6 329,285 + Rv0272c 0.63 -0.5 329,515 + Rv0272c 0.83 +1.1 329,551 + Rv0272c 0.86 -0.2 329,602 + -0.9 329,602 + -0.6 329,603 - -0.6 329,731 - -0.0 329,807 - Rv0273c 0.16 +2.0 330,036 + Rv0273c 0.53 +0.3 330,175 - Rv0273c 0.76 +1.6 330,180 + Rv0273c 0.76 -0.6 330,180 + Rv0273c 0.76 +0.1 330,860 + Rv0274 0.75 -0.4 330,860 + Rv0274 0.75 -0.0 330,861 - Rv0274 0.75 -0.2 330,861 - Rv0274 0.75 +0.3 330,861 - Rv0274 0.75 +0.0 330,861 - Rv0274 0.75 +0.4 330,865 - Rv0274 0.76 -1.1 331,080 + Rv0275c 0.20 +0.4 331,081 - Rv0275c 0.20 -1.1
Or see this region's nucleotide sequence