Strain Fitness in Pseudomonas sp. RS175 around PFR28_05139

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05138 and PFR28_05139 overlap by 4 nucleotidesPFR28_05139 and PFR28_05140 are separated by 170 nucleotides PFR28_05138: PFR28_05138 - hypothetical protein, at 5,885,572 to 5,886,498 _05138 PFR28_05139: PFR28_05139 - hypothetical protein, at 5,886,495 to 5,886,956 _05139 PFR28_05140: PFR28_05140 - hypothetical protein, at 5,887,127 to 5,890,420 _05140 Position (kb) 5886 5887Strain fitness (log2 ratio) -2 -1 0 1 2at 5885.536 kb on + strandat 5885.537 kb on - strandat 5885.571 kb on + strandat 5885.571 kb on + strandat 5885.571 kb on + strandat 5885.572 kb on - strandat 5885.572 kb on - strandat 5885.572 kb on - strandat 5885.583 kb on + strandat 5885.584 kb on - strandat 5885.584 kb on - strandat 5885.620 kb on + strandat 5885.620 kb on + strandat 5885.620 kb on + strandat 5885.621 kb on - strandat 5885.621 kb on - strandat 5885.621 kb on - strandat 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.716 kb on + strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.717 kb on - strand, within PFR28_05138at 5885.731 kb on + strand, within PFR28_05138at 5885.731 kb on + strand, within PFR28_05138at 5885.731 kb on + strand, within PFR28_05138at 5885.731 kb on + strand, within PFR28_05138at 5885.731 kb on + strand, within PFR28_05138at 5885.732 kb on - strand, within PFR28_05138at 5885.732 kb on - strand, within PFR28_05138at 5885.732 kb on - strand, within PFR28_05138at 5885.732 kb on - strand, within PFR28_05138at 5885.732 kb on - strand, within PFR28_05138at 5885.732 kb on - strand, within PFR28_05138at 5885.772 kb on + strand, within PFR28_05138at 5885.812 kb on + strand, within PFR28_05138at 5885.812 kb on + strand, within PFR28_05138at 5885.812 kb on + strand, within PFR28_05138at 5885.812 kb on + strand, within PFR28_05138at 5885.812 kb on + strand, within PFR28_05138at 5885.812 kb on + strand, within PFR28_05138at 5885.813 kb on - strand, within PFR28_05138at 5885.813 kb on - strand, within PFR28_05138at 5885.813 kb on - strand, within PFR28_05138at 5886.018 kb on + strand, within PFR28_05138at 5886.018 kb on + strand, within PFR28_05138at 5886.019 kb on - strand, within PFR28_05138at 5886.072 kb on + strand, within PFR28_05138at 5886.072 kb on + strand, within PFR28_05138at 5886.073 kb on - strand, within PFR28_05138at 5886.073 kb on - strand, within PFR28_05138at 5886.106 kb on + strand, within PFR28_05138at 5886.106 kb on + strand, within PFR28_05138at 5886.106 kb on + strand, within PFR28_05138at 5886.106 kb on + strand, within PFR28_05138at 5886.106 kb on + strand, within PFR28_05138at 5886.107 kb on - strand, within PFR28_05138at 5886.107 kb on - strand, within PFR28_05138at 5886.224 kb on - strand, within PFR28_05138at 5886.356 kb on - strand, within PFR28_05138at 5886.356 kb on - strand, within PFR28_05138at 5886.381 kb on + strand, within PFR28_05138at 5886.381 kb on + strand, within PFR28_05138at 5886.436 kb on + strandat 5886.436 kb on + strandat 5886.437 kb on - strandat 5886.437 kb on - strandat 5886.437 kb on - strandat 5886.437 kb on - strandat 5886.437 kb on - strandat 5886.648 kb on + strand, within PFR28_05139at 5886.648 kb on + strand, within PFR28_05139at 5886.649 kb on - strand, within PFR28_05139at 5886.649 kb on - strand, within PFR28_05139at 5886.649 kb on - strand, within PFR28_05139at 5886.810 kb on + strand, within PFR28_05139at 5886.810 kb on + strand, within PFR28_05139at 5886.811 kb on - strand, within PFR28_05139at 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.981 kb on + strandat 5886.982 kb on - strandat 5886.982 kb on - strandat 5887.024 kb on + strandat 5887.024 kb on + strandat 5887.025 kb on - strandat 5887.032 kb on + strandat 5887.032 kb on + strandat 5887.032 kb on + strandat 5887.033 kb on - strandat 5887.033 kb on - strandat 5887.079 kb on + strandat 5887.079 kb on + strandat 5887.079 kb on + strandat 5887.079 kb on + strandat 5887.080 kb on - strandat 5887.080 kb on - strandat 5887.080 kb on - strandat 5887.080 kb on - strandat 5887.080 kb on - strandat 5887.080 kb on - strandat 5887.164 kb on - strandat 5887.247 kb on + strandat 5887.247 kb on + strandat 5887.248 kb on - strandat 5887.248 kb on - strandat 5887.248 kb on - strandat 5887.248 kb on - strandat 5887.310 kb on + strandat 5887.310 kb on + strandat 5887.310 kb on + strandat 5887.310 kb on + strandat 5887.311 kb on - strandat 5887.311 kb on - strandat 5887.418 kb on + strandat 5887.418 kb on + strandat 5887.418 kb on + strandat 5887.419 kb on - strandat 5887.419 kb on - strandat 5887.475 kb on + strand, within PFR28_05140at 5887.475 kb on + strand, within PFR28_05140at 5887.475 kb on + strand, within PFR28_05140at 5887.514 kb on + strand, within PFR28_05140at 5887.514 kb on + strand, within PFR28_05140at 5887.515 kb on - strand, within PFR28_05140at 5887.525 kb on + strand, within PFR28_05140at 5887.525 kb on + strand, within PFR28_05140at 5887.598 kb on + strand, within PFR28_05140at 5887.598 kb on + strand, within PFR28_05140at 5887.598 kb on + strand, within PFR28_05140at 5887.829 kb on + strand, within PFR28_05140at 5887.829 kb on + strand, within PFR28_05140at 5887.829 kb on + strand, within PFR28_05140at 5887.829 kb on + strand, within PFR28_05140at 5887.829 kb on + strand, within PFR28_05140at 5887.830 kb on - strand, within PFR28_05140at 5887.830 kb on - strand, within PFR28_05140

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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5,885,536 + -0.6
5,885,537 - +0.2
5,885,571 + +0.1
5,885,571 + -0.3
5,885,571 + +0.2
5,885,572 - +0.7
5,885,572 - -0.2
5,885,572 - -0.7
5,885,583 + -0.0
5,885,584 - +0.1
5,885,584 - +0.8
5,885,620 + -1.0
5,885,620 + -0.0
5,885,620 + -0.5
5,885,621 - -0.2
5,885,621 - +0.0
5,885,621 - +0.2
5,885,716 + PFR28_05138 0.16 -0.1
5,885,716 + PFR28_05138 0.16 +1.0
5,885,716 + PFR28_05138 0.16 +0.4
5,885,716 + PFR28_05138 0.16 +0.9
5,885,716 + PFR28_05138 0.16 +0.2
5,885,716 + PFR28_05138 0.16 +1.1
5,885,716 + PFR28_05138 0.16 -0.2
5,885,716 + PFR28_05138 0.16 -0.7
5,885,716 + PFR28_05138 0.16 -0.0
5,885,717 - PFR28_05138 0.16 +0.0
5,885,717 - PFR28_05138 0.16 -0.0
5,885,717 - PFR28_05138 0.16 -0.1
5,885,717 - PFR28_05138 0.16 -1.0
5,885,717 - PFR28_05138 0.16 -0.6
5,885,717 - PFR28_05138 0.16 +0.2
5,885,717 - PFR28_05138 0.16 +0.3
5,885,717 - PFR28_05138 0.16 +0.9
5,885,717 - PFR28_05138 0.16 -0.7
5,885,717 - PFR28_05138 0.16 +0.3
5,885,717 - PFR28_05138 0.16 -0.6
5,885,717 - PFR28_05138 0.16 +0.4
5,885,717 - PFR28_05138 0.16 +0.4
5,885,717 - PFR28_05138 0.16 -0.4
5,885,731 + PFR28_05138 0.17 +0.9
5,885,731 + PFR28_05138 0.17 -0.5
5,885,731 + PFR28_05138 0.17 -0.6
5,885,731 + PFR28_05138 0.17 -0.5
5,885,731 + PFR28_05138 0.17 -0.2
5,885,732 - PFR28_05138 0.17 +0.4
5,885,732 - PFR28_05138 0.17 -0.8
5,885,732 - PFR28_05138 0.17 +1.4
5,885,732 - PFR28_05138 0.17 -0.6
5,885,732 - PFR28_05138 0.17 -0.4
5,885,732 - PFR28_05138 0.17 +0.1
5,885,772 + PFR28_05138 0.22 +0.9
5,885,812 + PFR28_05138 0.26 -0.3
5,885,812 + PFR28_05138 0.26 -0.3
5,885,812 + PFR28_05138 0.26 +0.4
5,885,812 + PFR28_05138 0.26 -0.2
5,885,812 + PFR28_05138 0.26 -0.9
5,885,812 + PFR28_05138 0.26 +0.4
5,885,813 - PFR28_05138 0.26 -0.5
5,885,813 - PFR28_05138 0.26 +0.5
5,885,813 - PFR28_05138 0.26 +0.1
5,886,018 + PFR28_05138 0.48 +0.2
5,886,018 + PFR28_05138 0.48 -0.9
5,886,019 - PFR28_05138 0.48 -0.6
5,886,072 + PFR28_05138 0.54 +0.7
5,886,072 + PFR28_05138 0.54 -0.4
5,886,073 - PFR28_05138 0.54 -0.5
5,886,073 - PFR28_05138 0.54 +1.3
5,886,106 + PFR28_05138 0.58 +0.4
5,886,106 + PFR28_05138 0.58 -1.3
5,886,106 + PFR28_05138 0.58 +0.7
5,886,106 + PFR28_05138 0.58 +1.5
5,886,106 + PFR28_05138 0.58 +0.2
5,886,107 - PFR28_05138 0.58 +0.5
5,886,107 - PFR28_05138 0.58 +1.0
5,886,224 - PFR28_05138 0.70 +0.6
5,886,356 - PFR28_05138 0.85 +2.4
5,886,356 - PFR28_05138 0.85 +0.6
5,886,381 + PFR28_05138 0.87 +0.2
5,886,381 + PFR28_05138 0.87 -1.9
5,886,436 + +0.4
5,886,436 + +0.8
5,886,437 - +0.4
5,886,437 - -0.4
5,886,437 - +0.3
5,886,437 - +0.6
5,886,437 - -1.1
5,886,648 + PFR28_05139 0.33 -0.6
5,886,648 + PFR28_05139 0.33 +1.7
5,886,649 - PFR28_05139 0.33 -0.6
5,886,649 - PFR28_05139 0.33 -1.9
5,886,649 - PFR28_05139 0.33 -1.8
5,886,810 + PFR28_05139 0.68 +2.4
5,886,810 + PFR28_05139 0.68 -0.6
5,886,811 - PFR28_05139 0.68 +0.4
5,886,981 + -0.7
5,886,981 + +2.4
5,886,981 + +0.1
5,886,981 + -0.0
5,886,981 + +0.3
5,886,981 + +0.6
5,886,981 + +0.9
5,886,981 + -1.2
5,886,981 + -0.7
5,886,982 - +0.6
5,886,982 - -0.2
5,887,024 + +0.3
5,887,024 + +0.7
5,887,025 - +0.5
5,887,032 + -0.1
5,887,032 + -1.0
5,887,032 + +0.1
5,887,033 - +0.6
5,887,033 - -0.6
5,887,079 + +0.4
5,887,079 + -0.3
5,887,079 + +0.0
5,887,079 + +0.2
5,887,080 - +1.1
5,887,080 - +1.0
5,887,080 - -1.4
5,887,080 - +0.3
5,887,080 - +0.9
5,887,080 - -0.3
5,887,164 - -0.2
5,887,247 + +1.0
5,887,247 + +0.4
5,887,248 - +0.3
5,887,248 - +1.0
5,887,248 - -1.0
5,887,248 - +0.1
5,887,310 + -0.7
5,887,310 + -0.6
5,887,310 + +0.0
5,887,310 + -1.2
5,887,311 - +0.5
5,887,311 - -0.6
5,887,418 + +0.6
5,887,418 + -1.0
5,887,418 + +0.9
5,887,419 - -0.2
5,887,419 - -0.3
5,887,475 + PFR28_05140 0.11 -0.9
5,887,475 + PFR28_05140 0.11 -0.9
5,887,475 + PFR28_05140 0.11 -0.5
5,887,514 + PFR28_05140 0.12 +0.1
5,887,514 + PFR28_05140 0.12 +1.4
5,887,515 - PFR28_05140 0.12 +0.6
5,887,525 + PFR28_05140 0.12 +0.1
5,887,525 + PFR28_05140 0.12 +0.4
5,887,598 + PFR28_05140 0.14 +1.8
5,887,598 + PFR28_05140 0.14 -0.2
5,887,598 + PFR28_05140 0.14 +1.1
5,887,829 + PFR28_05140 0.21 +1.1
5,887,829 + PFR28_05140 0.21 -0.5
5,887,829 + PFR28_05140 0.21 +0.3
5,887,829 + PFR28_05140 0.21 +0.2
5,887,829 + PFR28_05140 0.21 -0.0
5,887,830 - PFR28_05140 0.21 -0.1
5,887,830 - PFR28_05140 0.21 -0.1

Or see this region's nucleotide sequence