Strain Fitness in Pseudomonas sp. RS175 around PFR28_03103

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,608,358	+		PFR28_03102	0.44	-3.3
3,608,358	+		PFR28_03102	0.44	-1.5
3,608,358	+		PFR28_03102	0.44	-1.7
3,608,358	+		PFR28_03102	0.44	-1.0
3,608,358	+		PFR28_03102	0.44	-1.8
3,608,359	-		PFR28_03102	0.44	-2.1
3,608,359	-		PFR28_03102	0.44	+0.1
3,608,359	-		PFR28_03102	0.44	-0.9
3,608,359	-		PFR28_03102	0.44	-0.7
3,608,359	-		PFR28_03102	0.44	-3.8
3,608,359	-		PFR28_03102	0.44	-1.4
3,608,359	-		PFR28_03102	0.44	-0.3
3,608,364	+		PFR28_03102	0.44	-1.7
3,608,364	+		PFR28_03102	0.44	+1.8
3,608,365	-		PFR28_03102	0.44	-1.8
3,608,385	+		PFR28_03102	0.45	-1.1
3,608,385	+		PFR28_03102	0.45	-1.4
3,608,386	-		PFR28_03102	0.46	-0.7
3,608,386	-		PFR28_03102	0.46	-1.5
3,608,386	-		PFR28_03102	0.46	+0.5
3,608,386	-		PFR28_03102	0.46	-1.7
3,608,546	-		PFR28_03102	0.55	-1.5
3,608,701	-		PFR28_03102	0.64	-4.0
3,608,701	-		PFR28_03102	0.64	-2.8
3,608,701	-		PFR28_03102	0.64	-3.0
3,608,701	-		PFR28_03102	0.64	-1.5
3,608,701	-		PFR28_03102	0.64	-0.0
3,608,743	-		PFR28_03102	0.67	-0.7
3,608,743	-		PFR28_03102	0.67	-1.2
3,608,802	+		PFR28_03102	0.71	-3.0
3,608,802	+		PFR28_03102	0.71	-2.7
3,608,802	+		PFR28_03102	0.71	-0.9
3,608,803	-		PFR28_03102	0.71	-1.5
3,608,803	-		PFR28_03102	0.71	-2.9
3,608,803	-		PFR28_03102	0.71	-3.6
3,608,892	+		PFR28_03102	0.76	-0.5
3,608,892	+		PFR28_03102	0.76	-3.3
3,608,892	+		PFR28_03102	0.76	-1.5
3,608,892	+		PFR28_03102	0.76	-2.8
3,608,892	+		PFR28_03102	0.76	-2.7
3,608,892	+		PFR28_03102	0.76	+1.6
3,608,892	+		PFR28_03102	0.76	-2.2
3,608,893	-		PFR28_03102	0.76	-2.0
3,608,893	-		PFR28_03102	0.76	-2.0
3,608,893	-		PFR28_03102	0.76	-0.5
3,608,893	-		PFR28_03102	0.76	-1.9
3,608,893	-		PFR28_03102	0.76	-1.5
3,608,893	-		PFR28_03102	0.76	-0.7
3,608,893	-		PFR28_03102	0.76	-2.0
3,608,967	+		PFR28_03102	0.81	-0.2
3,608,968	-		PFR28_03102	0.81	-0.5
3,608,968	-		PFR28_03102	0.81	-3.6
3,608,982	+		PFR28_03102	0.81	-0.4
3,609,011	-		PFR28_03102	0.83	-2.3
3,609,036	+		PFR28_03102	0.85	-0.9
3,609,036	+		PFR28_03102	0.85	-0.0
3,609,036	+		PFR28_03102	0.85	-0.8
3,609,036	+		PFR28_03102	0.85	-3.4
3,609,036	+		PFR28_03102	0.85	-0.8
3,609,036	+		PFR28_03102	0.85	-1.3
3,609,036	+		PFR28_03102	0.85	-3.1
3,609,036	+		PFR28_03102	0.85	-4.0
3,609,036	+		PFR28_03102	0.85	-1.5
3,609,036	+		PFR28_03102	0.85	-3.7
3,609,037	-		PFR28_03102	0.85	-1.5
3,609,037	-		PFR28_03102	0.85	-1.5
3,609,037	-		PFR28_03102	0.85	-2.5
3,609,037	-		PFR28_03102	0.85	-1.0
3,609,037	-		PFR28_03102	0.85	-1.4
3,609,093	+		PFR28_03102	0.88	-2.3
3,609,093	+		PFR28_03102	0.88	-0.8
3,609,093	+		PFR28_03102	0.88	-1.7
3,609,093	+		PFR28_03102	0.88	-1.5
3,609,093	+		PFR28_03102	0.88	-1.3
3,609,094	-		PFR28_03102	0.88	-0.4
3,609,096	+		PFR28_03102	0.88	-2.0
3,609,096	+		PFR28_03102	0.88	-2.6
3,609,096	+		PFR28_03102	0.88	-1.7
3,609,096	+		PFR28_03102	0.88	-0.3
3,609,097	-		PFR28_03102	0.88	-2.4
3,609,097	-		PFR28_03102	0.88	-0.3
3,609,097	-		PFR28_03102	0.88	-1.8
3,609,097	-		PFR28_03102	0.88	+0.3
3,609,097	-		PFR28_03102	0.88	-1.3
3,609,133	-				+0.6
3,609,141	+				-1.3
3,609,141	+				-2.6
3,609,141	+				-3.6
3,609,141	+				-0.7
3,609,141	+				-1.3
3,609,142	-				-2.1
3,609,142	-				-1.0
3,609,142	-				-3.1
3,609,142	-				-3.2
3,609,142	-				-2.9
3,609,142	-				-2.3
3,609,142	-				-2.8
3,609,275	+				-2.5
3,609,353	+		PFR28_03103	0.21	+1.0
3,609,353	+		PFR28_03103	0.21	-2.8
3,609,353	+		PFR28_03103	0.21	-2.6
3,609,353	+		PFR28_03103	0.21	-3.0
3,609,353	+		PFR28_03103	0.21	-1.7
3,609,353	+		PFR28_03103	0.21	-2.0
3,609,354	-		PFR28_03103	0.22	-2.0
3,609,354	-		PFR28_03103	0.22	-1.8
3,609,354	-		PFR28_03103	0.22	-1.7
3,609,354	-		PFR28_03103	0.22	-0.9
3,609,354	-		PFR28_03103	0.22	-1.6
3,609,354	-		PFR28_03103	0.22	+0.1
3,609,354	-		PFR28_03103	0.22	+1.3
3,609,450	+		PFR28_03103	0.53	+0.1
3,609,450	+		PFR28_03103	0.53	-0.3
3,609,450	+		PFR28_03103	0.53	-0.7
3,609,450	+		PFR28_03103	0.53	-2.3
3,609,450	+		PFR28_03103	0.53	-1.5
3,609,450	+		PFR28_03103	0.53	-0.2
3,609,489	-		PFR28_03103	0.65	-1.5
3,609,489	-		PFR28_03103	0.65	-0.7
3,609,496	+		PFR28_03103	0.67	+0.7
3,609,496	+		PFR28_03103	0.67	+0.2
3,609,497	-		PFR28_03103	0.68	-1.4
3,609,581	+				-0.5
3,609,581	+				-0.8
3,609,581	+				-2.6
3,609,581	+				-0.7
3,609,581	+				-0.7
3,609,581	+				-3.5
3,609,582	-				-0.4
3,609,582	-				-1.3
3,609,623	+				+1.1
3,609,623	+				-0.8
3,609,638	+				-1.0
3,609,638	+				-0.1
3,609,638	+				+1.4
3,609,638	+				-1.1
3,609,639	-				+0.5
3,609,639	-				-0.2
3,609,639	-				+0.2
3,609,643	+				-2.9
3,609,643	+				+0.4
3,609,644	-				+1.4
3,609,644	-				+0.9
3,609,675	+				-1.0
3,609,675	+				-1.4
3,609,675	+				+1.1
3,609,675	+				-1.0
3,609,675	+				-1.5
3,609,675	+				-0.2
3,609,675	+				-3.1
3,609,676	-				-0.9
3,609,676	-				+1.2
3,609,676	-				-1.5
3,609,676	-				+1.0
3,609,676	-				+0.4
3,609,676	-				+0.0
3,609,676	-				-0.0
3,609,676	-				+0.7
3,609,678	+				+1.3
3,609,679	-				+1.0
3,609,681	+				+1.2
3,609,681	+				+0.7
3,609,681	+				-0.3
3,609,682	-				+0.1
3,609,682	-				+1.1
3,609,682	-				+1.3
3,609,728	+				+0.4
3,609,729	-				-0.1
3,609,729	-				-2.0
3,609,915	+				+0.3
3,609,916	-				+0.0
3,609,916	-				+0.2
3,609,916	-				+0.5
3,610,128	+		PFR28_03104	0.25	-0.0
3,610,128	+		PFR28_03104	0.25	-0.2
3,610,293	+		PFR28_03104	0.44	+0.4
3,610,293	+		PFR28_03104	0.44	-0.1
3,610,293	+		PFR28_03104	0.44	-1.3
3,610,294	-		PFR28_03104	0.44	+0.6
3,610,294	-		PFR28_03104	0.44	+0.1
3,610,410	+		PFR28_03104	0.58	-0.3
3,610,410	+		PFR28_03104	0.58	-0.4
3,610,411	-		PFR28_03104	0.58	-0.9
3,610,411	-		PFR28_03104	0.58	-0.3
3,610,411	-		PFR28_03104	0.58	-2.9
3,610,550	+		PFR28_03104	0.74	+0.1
3,610,551	-		PFR28_03104	0.75	+0.7
3,610,551	-		PFR28_03104	0.75	+0.6