Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17030

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17025 and ABID97_RS17030 are separated by 81 nucleotidesABID97_RS17030 and ABID97_RS17035 overlap by 4 nucleotides ABID97_RS17025: ABID97_RS17025 - acyl-CoA dehydrogenase family protein, at 3,518,116 to 3,519,387 _RS17025 ABID97_RS17030: ABID97_RS17030 - GNAT family N-acetyltransferase, at 3,519,469 to 3,519,957 _RS17030 ABID97_RS17035: ABID97_RS17035 - phosphoglucosamine mutase, at 3,519,954 to 3,521,291 _RS17035 Position (kb) 3519 3520Strain fitness (log2 ratio) -1 0 1at 3518.620 kb on + strand, within ABID97_RS17025at 3518.620 kb on + strand, within ABID97_RS17025at 3518.620 kb on + strand, within ABID97_RS17025at 3518.797 kb on + strand, within ABID97_RS17025at 3518.830 kb on + strand, within ABID97_RS17025at 3518.830 kb on + strand, within ABID97_RS17025at 3518.830 kb on + strand, within ABID97_RS17025at 3518.831 kb on - strand, within ABID97_RS17025at 3519.251 kb on - strand, within ABID97_RS17025at 3519.341 kb on - strandat 3519.875 kb on + strand, within ABID97_RS17030

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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3,518,620 + ABID97_RS17025 0.40 -0.2
3,518,620 + ABID97_RS17025 0.40 -0.2
3,518,620 + ABID97_RS17025 0.40 +0.2
3,518,797 + ABID97_RS17025 0.54 +0.9
3,518,830 + ABID97_RS17025 0.56 -0.5
3,518,830 + ABID97_RS17025 0.56 +0.2
3,518,830 + ABID97_RS17025 0.56 -0.8
3,518,831 - ABID97_RS17025 0.56 -0.1
3,519,251 - ABID97_RS17025 0.89 +0.2
3,519,341 - +0.0
3,519,875 + ABID97_RS17030 0.83 -1.1

Or see this region's nucleotide sequence