Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01300 and ABID97_RS01305 overlap by 4 nucleotides ABID97_RS01305 and ABID97_RS01310 are separated by 14 nucleotides ABID97_RS01310 and ABID97_RS01315 overlap by 4 nucleotides ABID97_RS01315 and ABID97_RS01320 overlap by 8 nucleotides
ABID97_RS01300: ABID97_RS01300 - ribonuclease activity regulator RraA, at 265,756 to 266,526
_RS01300
ABID97_RS01305: ABID97_RS01305 - Rid family hydrolase, at 266,523 to 266,927
_RS01305
ABID97_RS01310: ABID97_RS01310 - VOC family protein, at 266,942 to 267,877
_RS01310
ABID97_RS01315: ABID97_RS01315 - ABC transporter ATP-binding protein, at 267,874 to 268,614
_RS01315
ABID97_RS01320: ABID97_RS01320 - ABC transporter ATP-binding protein, at 268,607 to 269,368
_RS01320
Position (kb) 266
267
268 Strain fitness (log2 ratio) -1
0
1
2
3 at 265.989 kb on - strand, within ABID97_RS01300 at 265.989 kb on - strand, within ABID97_RS01300 at 265.989 kb on - strand at 266.693 kb on - strand, within ABID97_RS01305 at 266.693 kb on - strand, within ABID97_RS01305 at 266.693 kb on - strand, within ABID97_RS01305 at 266.920 kb on - strand at 267.052 kb on - strand, within ABID97_RS01310 at 267.088 kb on - strand, within ABID97_RS01310 at 267.141 kb on + strand, within ABID97_RS01310 at 267.856 kb on - strand at 268.004 kb on + strand, within ABID97_RS01315 at 268.004 kb on + strand, within ABID97_RS01315 at 268.729 kb on + strand, within ABID97_RS01320 at 268.729 kb on + strand, within ABID97_RS01320 at 268.730 kb on - strand, within ABID97_RS01320 at 268.730 kb on - strand, within ABID97_RS01320
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 265,989 - ABID97_RS01300 0.30 +0.4 265,989 - ABID97_RS01300 0.30 -0.2 265,989 - -1.0 266,693 - ABID97_RS01305 0.42 -0.5 266,693 - ABID97_RS01305 0.42 +0.9 266,693 - ABID97_RS01305 0.42 -0.3 266,920 - +0.7 267,052 - ABID97_RS01310 0.12 -0.5 267,088 - ABID97_RS01310 0.16 -1.2 267,141 + ABID97_RS01310 0.21 -0.6 267,856 - -1.4 268,004 + ABID97_RS01315 0.18 +3.1 268,004 + ABID97_RS01315 0.18 +0.0 268,729 + ABID97_RS01320 0.16 +0.5 268,729 + ABID97_RS01320 0.16 +0.0 268,730 - ABID97_RS01320 0.16 +0.0 268,730 - ABID97_RS01320 0.16 +0.1
Or see this region's nucleotide sequence