Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02520 and HMPREF1058_RS02515 are separated by 525 nucleotides HMPREF1058_RS02515 and HMPREF1058_RS02510 are separated by 64 nucleotides
HMPREF1058_RS02520: HMPREF1058_RS02520 - urocanate hydratase, at 162,934 to 164,931
_RS02520
HMPREF1058_RS02515: HMPREF1058_RS02515 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 165,457 to 166,674
_RS02515
HMPREF1058_RS02510: HMPREF1058_RS02510 - DUF2027 domain-containing protein, at 166,739 to 167,827
_RS02510
Position (kb) 165
166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 164.541 kb on - strand, within HMPREF1058_RS02520 at 164.595 kb on - strand, within HMPREF1058_RS02520 at 164.674 kb on - strand, within HMPREF1058_RS02520 at 164.675 kb on + strand, within HMPREF1058_RS02520 at 164.729 kb on + strand, within HMPREF1058_RS02520 at 164.730 kb on - strand, within HMPREF1058_RS02520 at 164.905 kb on + strand at 164.931 kb on + strand at 164.932 kb on - strand at 164.932 kb on - strand at 164.976 kb on - strand at 165.006 kb on + strand at 165.007 kb on - strand at 165.007 kb on - strand at 165.007 kb on - strand at 165.037 kb on - strand at 165.083 kb on + strand at 165.103 kb on - strand at 165.107 kb on + strand at 165.107 kb on + strand at 165.217 kb on + strand at 165.218 kb on - strand at 165.233 kb on - strand at 165.240 kb on - strand at 165.282 kb on - strand at 165.401 kb on + strand at 165.403 kb on + strand at 165.406 kb on + strand at 165.406 kb on + strand at 165.406 kb on + strand at 165.459 kb on - strand at 165.459 kb on - strand at 165.525 kb on - strand at 165.577 kb on - strand at 165.624 kb on - strand, within HMPREF1058_RS02515 at 165.624 kb on - strand, within HMPREF1058_RS02515 at 165.627 kb on + strand, within HMPREF1058_RS02515 at 165.627 kb on + strand, within HMPREF1058_RS02515 at 165.628 kb on - strand, within HMPREF1058_RS02515 at 165.628 kb on - strand, within HMPREF1058_RS02515 at 165.646 kb on - strand, within HMPREF1058_RS02515 at 165.661 kb on - strand, within HMPREF1058_RS02515 at 165.739 kb on - strand, within HMPREF1058_RS02515 at 165.901 kb on - strand, within HMPREF1058_RS02515 at 165.921 kb on - strand, within HMPREF1058_RS02515 at 165.946 kb on + strand, within HMPREF1058_RS02515 at 166.201 kb on - strand, within HMPREF1058_RS02515 at 166.315 kb on - strand, within HMPREF1058_RS02515 at 166.342 kb on + strand, within HMPREF1058_RS02515 at 166.342 kb on + strand, within HMPREF1058_RS02515 at 166.391 kb on + strand, within HMPREF1058_RS02515 at 166.392 kb on - strand, within HMPREF1058_RS02515 at 166.392 kb on - strand, within HMPREF1058_RS02515 at 166.424 kb on - strand, within HMPREF1058_RS02515 at 166.492 kb on + strand, within HMPREF1058_RS02515 at 166.533 kb on + strand, within HMPREF1058_RS02515 at 166.746 kb on + strand at 166.753 kb on + strand at 166.753 kb on + strand at 166.754 kb on - strand at 166.754 kb on - strand at 166.895 kb on - strand, within HMPREF1058_RS02510 at 166.897 kb on + strand, within HMPREF1058_RS02510 at 166.897 kb on + strand, within HMPREF1058_RS02510 at 167.012 kb on + strand, within HMPREF1058_RS02510 at 167.087 kb on - strand, within HMPREF1058_RS02510 at 167.087 kb on - strand, within HMPREF1058_RS02510 at 167.111 kb on + strand, within HMPREF1058_RS02510 at 167.111 kb on + strand, within HMPREF1058_RS02510 at 167.141 kb on + strand, within HMPREF1058_RS02510 at 167.151 kb on - strand, within HMPREF1058_RS02510 at 167.167 kb on + strand, within HMPREF1058_RS02510 at 167.341 kb on - strand, within HMPREF1058_RS02510 at 167.344 kb on + strand, within HMPREF1058_RS02510 at 167.368 kb on + strand, within HMPREF1058_RS02510 at 167.368 kb on + strand, within HMPREF1058_RS02510 at 167.384 kb on - strand, within HMPREF1058_RS02510 at 167.411 kb on + strand, within HMPREF1058_RS02510 at 167.412 kb on - strand, within HMPREF1058_RS02510 at 167.418 kb on + strand, within HMPREF1058_RS02510 at 167.419 kb on - strand, within HMPREF1058_RS02510 at 167.469 kb on + strand, within HMPREF1058_RS02510 at 167.470 kb on - strand, within HMPREF1058_RS02510
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 164,541 - HMPREF1058_RS02520 0.80 -1.7 164,595 - HMPREF1058_RS02520 0.83 +0.8 164,674 - HMPREF1058_RS02520 0.87 +0.7 164,675 + HMPREF1058_RS02520 0.87 +1.8 164,729 + HMPREF1058_RS02520 0.90 -0.2 164,730 - HMPREF1058_RS02520 0.90 +3.1 164,905 + +0.1 164,931 + +0.7 164,932 - +1.7 164,932 - +3.7 164,976 - +0.6 165,006 + +1.3 165,007 - +2.5 165,007 - +2.6 165,007 - -1.7 165,037 - -1.1 165,083 + +0.7 165,103 - +1.0 165,107 + -0.1 165,107 + -0.8 165,217 + -0.1 165,218 - -1.7 165,233 - -0.1 165,240 - +0.7 165,282 - +1.7 165,401 + +1.6 165,403 + +1.7 165,406 + +1.1 165,406 + +0.7 165,406 + +2.7 165,459 - -0.0 165,459 - -2.3 165,525 - +0.4 165,577 - -1.1 165,624 - HMPREF1058_RS02515 0.14 -0.7 165,624 - HMPREF1058_RS02515 0.14 -1.3 165,627 + HMPREF1058_RS02515 0.14 -3.2 165,627 + HMPREF1058_RS02515 0.14 +0.7 165,628 - HMPREF1058_RS02515 0.14 -1.7 165,628 - HMPREF1058_RS02515 0.14 -2.5 165,646 - HMPREF1058_RS02515 0.16 -3.0 165,661 - HMPREF1058_RS02515 0.17 -0.7 165,739 - HMPREF1058_RS02515 0.23 -0.1 165,901 - HMPREF1058_RS02515 0.36 -1.8 165,921 - HMPREF1058_RS02515 0.38 -2.9 165,946 + HMPREF1058_RS02515 0.40 -1.7 166,201 - HMPREF1058_RS02515 0.61 -3.9 166,315 - HMPREF1058_RS02515 0.70 -1.3 166,342 + HMPREF1058_RS02515 0.73 -1.3 166,342 + HMPREF1058_RS02515 0.73 -2.0 166,391 + HMPREF1058_RS02515 0.77 -0.5 166,392 - HMPREF1058_RS02515 0.77 +1.2 166,392 - HMPREF1058_RS02515 0.77 -1.2 166,424 - HMPREF1058_RS02515 0.79 -2.1 166,492 + HMPREF1058_RS02515 0.85 -0.3 166,533 + HMPREF1058_RS02515 0.88 -2.2 166,746 + -0.2 166,753 + +0.3 166,753 + +3.8 166,754 - +0.2 166,754 - -1.7 166,895 - HMPREF1058_RS02510 0.14 -2.5 166,897 + HMPREF1058_RS02510 0.15 -0.6 166,897 + HMPREF1058_RS02510 0.15 -1.3 167,012 + HMPREF1058_RS02510 0.25 -0.3 167,087 - HMPREF1058_RS02510 0.32 -0.4 167,087 - HMPREF1058_RS02510 0.32 -0.1 167,111 + HMPREF1058_RS02510 0.34 +1.0 167,111 + HMPREF1058_RS02510 0.34 +2.6 167,141 + HMPREF1058_RS02510 0.37 +1.3 167,151 - HMPREF1058_RS02510 0.38 -1.3 167,167 + HMPREF1058_RS02510 0.39 +1.0 167,341 - HMPREF1058_RS02510 0.55 +1.1 167,344 + HMPREF1058_RS02510 0.56 +0.6 167,368 + HMPREF1058_RS02510 0.58 +0.8 167,368 + HMPREF1058_RS02510 0.58 -0.1 167,384 - HMPREF1058_RS02510 0.59 -1.3 167,411 + HMPREF1058_RS02510 0.62 +1.8 167,412 - HMPREF1058_RS02510 0.62 +1.4 167,418 + HMPREF1058_RS02510 0.62 -0.1 167,419 - HMPREF1058_RS02510 0.62 -0.3 167,469 + HMPREF1058_RS02510 0.67 +0.2 167,470 - HMPREF1058_RS02510 0.67 -2.3
Or see this region's nucleotide sequence