Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03525

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03510 and LU632_RS03515 overlap by 1 nucleotidesLU632_RS03515 and LU632_RS03520 are separated by 1 nucleotidesLU632_RS03520 and LU632_RS03525 overlap by 4 nucleotidesLU632_RS03525 and LU632_RS03530 overlap by 8 nucleotides LU632_RS03510: LU632_RS03510 - DUF2732 domain-containing protein, at 712,565 to 712,792 _RS03510 LU632_RS03515: LU632_RS03515 - TraR/DksA family transcriptional regulator, at 712,792 to 713,013 _RS03515 LU632_RS03520: LU632_RS03520 - 3'-5' exonuclease, at 713,015 to 713,722 _RS03520 LU632_RS03525: LU632_RS03525 - DUF5405 family protein, at 713,719 to 714,000 _RS03525 LU632_RS03530: LU632_RS03530 - replication endonuclease, at 713,993 to 716,218 _RS03530 Position (kb) 713 714 715Strain fitness (log2 ratio) -1 0 1at 712.851 kb on - strand, within LU632_RS03515at 712.851 kb on - strand, within LU632_RS03515at 712.851 kb on - strand, within LU632_RS03515at 712.851 kb on - strand, within LU632_RS03515at 713.053 kb on - strandat 713.198 kb on - strand, within LU632_RS03520at 713.291 kb on - strand, within LU632_RS03520at 713.311 kb on + strand, within LU632_RS03520at 713.326 kb on + strand, within LU632_RS03520at 713.404 kb on - strand, within LU632_RS03520at 713.404 kb on - strand, within LU632_RS03520at 713.422 kb on - strand, within LU632_RS03520at 713.422 kb on - strand, within LU632_RS03520at 713.424 kb on + strand, within LU632_RS03520at 713.445 kb on - strand, within LU632_RS03520at 713.445 kb on - strand, within LU632_RS03520at 713.507 kb on + strand, within LU632_RS03520at 713.531 kb on - strand, within LU632_RS03520at 713.541 kb on - strand, within LU632_RS03520at 713.550 kb on - strand, within LU632_RS03520at 713.550 kb on - strand, within LU632_RS03520at 713.611 kb on + strand, within LU632_RS03520at 713.735 kb on + strandat 713.736 kb on - strandat 713.736 kb on - strandat 713.738 kb on + strandat 713.739 kb on - strandat 713.885 kb on + strand, within LU632_RS03525at 713.886 kb on - strand, within LU632_RS03525at 713.914 kb on - strand, within LU632_RS03525at 713.960 kb on + strand, within LU632_RS03525at 713.961 kb on - strand, within LU632_RS03525at 713.961 kb on - strand, within LU632_RS03525at 713.961 kb on - strand, within LU632_RS03525at 713.998 kb on + strandat 713.998 kb on + strandat 713.998 kb on + strandat 713.998 kb on + strandat 714.014 kb on + strandat 714.014 kb on + strandat 714.014 kb on + strandat 714.015 kb on - strandat 714.015 kb on - strandat 714.015 kb on - strandat 714.059 kb on + strandat 714.060 kb on - strandat 714.068 kb on + strandat 714.069 kb on - strandat 714.095 kb on - strandat 714.095 kb on - strandat 714.303 kb on + strand, within LU632_RS03530at 714.303 kb on + strand, within LU632_RS03530at 714.344 kb on - strand, within LU632_RS03530at 714.344 kb on - strand, within LU632_RS03530at 714.350 kb on + strand, within LU632_RS03530at 714.351 kb on - strand, within LU632_RS03530at 714.351 kb on - strand, within LU632_RS03530at 714.374 kb on - strand, within LU632_RS03530at 714.387 kb on - strand, within LU632_RS03530at 714.388 kb on + strand, within LU632_RS03530at 714.403 kb on + strand, within LU632_RS03530at 714.403 kb on + strand, within LU632_RS03530at 714.404 kb on - strand, within LU632_RS03530at 714.440 kb on - strand, within LU632_RS03530at 714.490 kb on + strand, within LU632_RS03530at 714.518 kb on + strand, within LU632_RS03530at 714.519 kb on - strand, within LU632_RS03530at 714.519 kb on - strand, within LU632_RS03530at 714.590 kb on + strand, within LU632_RS03530at 714.620 kb on - strand, within LU632_RS03530at 714.851 kb on + strand, within LU632_RS03530at 714.852 kb on + strand, within LU632_RS03530at 714.879 kb on + strand, within LU632_RS03530at 714.879 kb on + strand, within LU632_RS03530at 714.880 kb on - strand, within LU632_RS03530at 714.922 kb on + strand, within LU632_RS03530at 714.980 kb on + strand, within LU632_RS03530at 714.988 kb on + strand, within LU632_RS03530

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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712,851 - LU632_RS03515 0.27 -0.3
712,851 - LU632_RS03515 0.27 +0.8
712,851 - LU632_RS03515 0.27 +0.3
712,851 - LU632_RS03515 0.27 -0.2
713,053 - -0.1
713,198 - LU632_RS03520 0.26 -0.6
713,291 - LU632_RS03520 0.39 -0.3
713,311 + LU632_RS03520 0.42 -0.6
713,326 + LU632_RS03520 0.44 +0.5
713,404 - LU632_RS03520 0.55 +0.2
713,404 - LU632_RS03520 0.55 +0.1
713,422 - LU632_RS03520 0.57 -0.1
713,422 - LU632_RS03520 0.57 -0.9
713,424 + LU632_RS03520 0.58 +0.3
713,445 - LU632_RS03520 0.61 -0.1
713,445 - LU632_RS03520 0.61 -0.1
713,507 + LU632_RS03520 0.69 +0.5
713,531 - LU632_RS03520 0.73 +0.5
713,541 - LU632_RS03520 0.74 -0.2
713,550 - LU632_RS03520 0.76 +0.0
713,550 - LU632_RS03520 0.76 +1.3
713,611 + LU632_RS03520 0.84 +0.0
713,735 + +0.3
713,736 - -0.5
713,736 - +0.2
713,738 + +0.9
713,739 - +1.0
713,885 + LU632_RS03525 0.59 -0.3
713,886 - LU632_RS03525 0.59 +0.3
713,914 - LU632_RS03525 0.69 +0.2
713,960 + LU632_RS03525 0.85 -0.3
713,961 - LU632_RS03525 0.86 -1.5
713,961 - LU632_RS03525 0.86 -1.1
713,961 - LU632_RS03525 0.86 -0.9
713,998 + +0.1
713,998 + +0.6
713,998 + -0.7
713,998 + -0.5
714,014 + +0.4
714,014 + +1.3
714,014 + +0.7
714,015 - +0.1
714,015 - -0.7
714,015 - +0.4
714,059 + -0.1
714,060 - +0.2
714,068 + +0.5
714,069 - +1.0
714,095 - +0.7
714,095 - -0.5
714,303 + LU632_RS03530 0.14 -0.1
714,303 + LU632_RS03530 0.14 +0.9
714,344 - LU632_RS03530 0.16 -0.3
714,344 - LU632_RS03530 0.16 -0.8
714,350 + LU632_RS03530 0.16 +0.0
714,351 - LU632_RS03530 0.16 -0.7
714,351 - LU632_RS03530 0.16 +0.1
714,374 - LU632_RS03530 0.17 -0.1
714,387 - LU632_RS03530 0.18 +0.6
714,388 + LU632_RS03530 0.18 +1.3
714,403 + LU632_RS03530 0.18 -0.2
714,403 + LU632_RS03530 0.18 -0.7
714,404 - LU632_RS03530 0.18 +0.6
714,440 - LU632_RS03530 0.20 +0.4
714,490 + LU632_RS03530 0.22 -0.8
714,518 + LU632_RS03530 0.24 +0.9
714,519 - LU632_RS03530 0.24 +1.1
714,519 - LU632_RS03530 0.24 +1.0
714,590 + LU632_RS03530 0.27 +1.0
714,620 - LU632_RS03530 0.28 -0.9
714,851 + LU632_RS03530 0.39 -0.5
714,852 + LU632_RS03530 0.39 +0.6
714,879 + LU632_RS03530 0.40 +0.0
714,879 + LU632_RS03530 0.40 -0.1
714,880 - LU632_RS03530 0.40 +0.8
714,922 + LU632_RS03530 0.42 -1.7
714,980 + LU632_RS03530 0.44 +0.3
714,988 + LU632_RS03530 0.45 +0.1

Or see this region's nucleotide sequence