Experiment: Bas49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00286 and ECD_00287 are separated by 439 nucleotides ECD_00287 and ECD_00288 are separated by 33 nucleotides
ECD_00286: ECD_00286 - 2-methylisocitrate lyase, at 318,311 to 319,201
_00286
ECD_00287: ECD_00287 - 2-methylcitrate synthase, at 319,641 to 320,810
_00287
ECD_00288: ECD_00288 - 2-methylcitrate dehydratase, at 320,844 to 322,295
_00288
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 318.649 kb on + strand, within ECD_00286 at 318.839 kb on + strand, within ECD_00286 at 318.840 kb on - strand, within ECD_00286 at 318.970 kb on + strand, within ECD_00286 at 319.061 kb on + strand, within ECD_00286 at 319.061 kb on + strand, within ECD_00286 at 319.061 kb on + strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.145 kb on + strand at 319.145 kb on + strand at 319.148 kb on + strand at 319.155 kb on - strand at 319.258 kb on + strand at 319.258 kb on + strand at 319.267 kb on + strand at 319.267 kb on + strand at 319.268 kb on - strand at 319.268 kb on - strand at 319.295 kb on + strand at 319.351 kb on + strand at 319.352 kb on - strand at 319.352 kb on - strand at 319.379 kb on + strand at 319.445 kb on - strand at 319.555 kb on + strand at 319.555 kb on + strand at 319.555 kb on + strand at 319.556 kb on - strand at 319.556 kb on - strand at 319.565 kb on + strand at 319.575 kb on - strand at 319.613 kb on + strand at 319.671 kb on - strand at 319.749 kb on - strand at 319.770 kb on + strand, within ECD_00287 at 319.876 kb on - strand, within ECD_00287 at 320.021 kb on + strand, within ECD_00287 at 320.021 kb on + strand, within ECD_00287 at 320.086 kb on - strand, within ECD_00287 at 320.098 kb on - strand, within ECD_00287 at 320.214 kb on - strand, within ECD_00287 at 320.214 kb on - strand, within ECD_00287 at 320.230 kb on - strand, within ECD_00287 at 320.294 kb on + strand, within ECD_00287 at 320.294 kb on + strand, within ECD_00287 at 320.294 kb on + strand, within ECD_00287 at 320.298 kb on + strand, within ECD_00287 at 320.298 kb on + strand, within ECD_00287 at 320.299 kb on - strand, within ECD_00287 at 320.443 kb on + strand, within ECD_00287 at 320.444 kb on - strand, within ECD_00287 at 320.444 kb on - strand, within ECD_00287 at 320.472 kb on - strand, within ECD_00287 at 320.550 kb on + strand, within ECD_00287 at 320.550 kb on + strand, within ECD_00287 at 320.551 kb on - strand, within ECD_00287 at 320.760 kb on + strand at 320.761 kb on - strand at 320.829 kb on - strand at 320.933 kb on + strand at 321.113 kb on + strand, within ECD_00288 at 321.113 kb on + strand, within ECD_00288 at 321.364 kb on + strand, within ECD_00288 at 321.670 kb on - strand, within ECD_00288 at 321.670 kb on - strand, within ECD_00288 at 321.670 kb on - strand, within ECD_00288 at 321.753 kb on + strand, within ECD_00288 at 321.753 kb on + strand, within ECD_00288
Per-strain Table
Position Strand Gene LocusTag Fraction Bas49 remove 318,649 + ECD_00286 0.38 +1.9 318,839 + ECD_00286 0.59 +1.1 318,840 - ECD_00286 0.59 -0.1 318,970 + ECD_00286 0.74 +2.2 319,061 + ECD_00286 0.84 -2.5 319,061 + ECD_00286 0.84 +0.2 319,061 + ECD_00286 0.84 +0.4 319,062 - ECD_00286 0.84 +3.3 319,062 - ECD_00286 0.84 +4.1 319,062 - ECD_00286 0.84 +0.3 319,062 - ECD_00286 0.84 -1.3 319,062 - ECD_00286 0.84 -0.5 319,062 - ECD_00286 0.84 +1.6 319,145 + +1.0 319,145 + +1.0 319,148 + +1.0 319,155 - +1.7 319,258 + +1.1 319,258 + -0.8 319,267 + -1.1 319,267 + +1.5 319,268 - +2.6 319,268 - +0.8 319,295 + +0.5 319,351 + -1.3 319,352 - -0.1 319,352 - -0.4 319,379 + -0.5 319,445 - +2.1 319,555 + +1.7 319,555 + +1.2 319,555 + +0.3 319,556 - +1.9 319,556 - +0.5 319,565 + +2.7 319,575 - -1.1 319,613 + +1.9 319,671 - +0.1 319,749 - +1.0 319,770 + ECD_00287 0.11 +1.7 319,876 - ECD_00287 0.20 +1.9 320,021 + ECD_00287 0.32 +1.5 320,021 + ECD_00287 0.32 +0.8 320,086 - ECD_00287 0.38 +2.3 320,098 - ECD_00287 0.39 +0.8 320,214 - ECD_00287 0.49 -1.5 320,214 - ECD_00287 0.49 +2.2 320,230 - ECD_00287 0.50 +2.2 320,294 + ECD_00287 0.56 -0.1 320,294 + ECD_00287 0.56 +0.2 320,294 + ECD_00287 0.56 +1.4 320,298 + ECD_00287 0.56 +0.6 320,298 + ECD_00287 0.56 +3.0 320,299 - ECD_00287 0.56 -2.1 320,443 + ECD_00287 0.69 +0.1 320,444 - ECD_00287 0.69 +2.4 320,444 - ECD_00287 0.69 -1.1 320,472 - ECD_00287 0.71 +0.3 320,550 + ECD_00287 0.78 +1.5 320,550 + ECD_00287 0.78 +1.7 320,551 - ECD_00287 0.78 +0.8 320,760 + +1.3 320,761 - +1.0 320,829 - -1.3 320,933 + +1.8 321,113 + ECD_00288 0.19 +0.5 321,113 + ECD_00288 0.19 -0.5 321,364 + ECD_00288 0.36 +2.5 321,670 - ECD_00288 0.57 +1.3 321,670 - ECD_00288 0.57 -1.8 321,670 - ECD_00288 0.57 +0.8 321,753 + ECD_00288 0.63 +1.0 321,753 + ECD_00288 0.63 -2.0
Or see this region's nucleotide sequence