Strain Fitness in Escherichia coli BL21 around ECD_00286

Experiment: Bas49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00285 and ECD_00286 are separated by 238 nucleotidesECD_00286 and ECD_00287 are separated by 439 nucleotides ECD_00285: ECD_00285 - propionate catabolism operon regulatory protein, at 316,486 to 318,072 _00285 ECD_00286: ECD_00286 - 2-methylisocitrate lyase, at 318,311 to 319,201 _00286 ECD_00287: ECD_00287 - 2-methylcitrate synthase, at 319,641 to 320,810 _00287 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 317.369 kb on + strand, within ECD_00285at 317.544 kb on - strand, within ECD_00285at 317.629 kb on + strand, within ECD_00285at 317.669 kb on + strand, within ECD_00285at 317.670 kb on - strand, within ECD_00285at 317.670 kb on - strand, within ECD_00285at 317.670 kb on - strand, within ECD_00285at 317.670 kb on - strand, within ECD_00285at 317.670 kb on - strand, within ECD_00285at 317.670 kb on - strand, within ECD_00285at 317.673 kb on + strand, within ECD_00285at 317.674 kb on - strand, within ECD_00285at 317.674 kb on - strand, within ECD_00285at 317.674 kb on - strand, within ECD_00285at 317.727 kb on + strand, within ECD_00285at 317.918 kb on + strandat 317.956 kb on - strandat 318.052 kb on - strandat 318.497 kb on - strand, within ECD_00286at 318.625 kb on + strand, within ECD_00286at 318.649 kb on + strand, within ECD_00286at 318.839 kb on + strand, within ECD_00286at 318.840 kb on - strand, within ECD_00286at 318.970 kb on + strand, within ECD_00286at 319.061 kb on + strand, within ECD_00286at 319.061 kb on + strand, within ECD_00286at 319.061 kb on + strand, within ECD_00286at 319.062 kb on - strand, within ECD_00286at 319.062 kb on - strand, within ECD_00286at 319.062 kb on - strand, within ECD_00286at 319.062 kb on - strand, within ECD_00286at 319.062 kb on - strand, within ECD_00286at 319.062 kb on - strand, within ECD_00286at 319.145 kb on + strandat 319.145 kb on + strandat 319.148 kb on + strandat 319.155 kb on - strandat 319.258 kb on + strandat 319.258 kb on + strandat 319.267 kb on + strandat 319.267 kb on + strandat 319.268 kb on - strandat 319.268 kb on - strandat 319.295 kb on + strandat 319.351 kb on + strandat 319.352 kb on - strandat 319.352 kb on - strandat 319.379 kb on + strandat 319.445 kb on - strandat 319.555 kb on + strandat 319.555 kb on + strandat 319.555 kb on + strandat 319.556 kb on - strandat 319.556 kb on - strandat 319.565 kb on + strandat 319.575 kb on - strandat 319.613 kb on + strandat 319.671 kb on - strandat 319.749 kb on - strandat 319.770 kb on + strand, within ECD_00287at 319.876 kb on - strand, within ECD_00287at 320.021 kb on + strand, within ECD_00287at 320.021 kb on + strand, within ECD_00287at 320.086 kb on - strand, within ECD_00287at 320.098 kb on - strand, within ECD_00287

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas49
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317,369 + ECD_00285 0.56 +1.3
317,544 - ECD_00285 0.67 +0.3
317,629 + ECD_00285 0.72 +2.4
317,669 + ECD_00285 0.75 +1.9
317,670 - ECD_00285 0.75 +0.9
317,670 - ECD_00285 0.75 +0.6
317,670 - ECD_00285 0.75 +1.5
317,670 - ECD_00285 0.75 +1.1
317,670 - ECD_00285 0.75 +1.9
317,670 - ECD_00285 0.75 +0.2
317,673 + ECD_00285 0.75 +0.9
317,674 - ECD_00285 0.75 +2.7
317,674 - ECD_00285 0.75 -0.1
317,674 - ECD_00285 0.75 +0.7
317,727 + ECD_00285 0.78 -0.8
317,918 + +1.0
317,956 - -1.0
318,052 - -0.2
318,497 - ECD_00286 0.21 +0.5
318,625 + ECD_00286 0.35 +0.5
318,649 + ECD_00286 0.38 +1.9
318,839 + ECD_00286 0.59 +1.1
318,840 - ECD_00286 0.59 -0.1
318,970 + ECD_00286 0.74 +2.2
319,061 + ECD_00286 0.84 -2.5
319,061 + ECD_00286 0.84 +0.2
319,061 + ECD_00286 0.84 +0.4
319,062 - ECD_00286 0.84 +3.3
319,062 - ECD_00286 0.84 +4.1
319,062 - ECD_00286 0.84 +0.3
319,062 - ECD_00286 0.84 -1.3
319,062 - ECD_00286 0.84 -0.5
319,062 - ECD_00286 0.84 +1.6
319,145 + +1.0
319,145 + +1.0
319,148 + +1.0
319,155 - +1.7
319,258 + +1.1
319,258 + -0.8
319,267 + -1.1
319,267 + +1.5
319,268 - +2.6
319,268 - +0.8
319,295 + +0.5
319,351 + -1.3
319,352 - -0.1
319,352 - -0.4
319,379 + -0.5
319,445 - +2.1
319,555 + +1.7
319,555 + +1.2
319,555 + +0.3
319,556 - +1.9
319,556 - +0.5
319,565 + +2.7
319,575 - -1.1
319,613 + +1.9
319,671 - +0.1
319,749 - +1.0
319,770 + ECD_00287 0.11 +1.7
319,876 - ECD_00287 0.20 +1.9
320,021 + ECD_00287 0.32 +1.5
320,021 + ECD_00287 0.32 +0.8
320,086 - ECD_00287 0.38 +2.3
320,098 - ECD_00287 0.39 +0.8

Or see this region's nucleotide sequence