Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07085

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07075 and LU632_RS07080 are separated by 43 nucleotidesLU632_RS07080 and LU632_RS07085 overlap by 4 nucleotidesLU632_RS07085 and LU632_RS07090 are separated by 192 nucleotidesLU632_RS07090 and LU632_RS07095 are separated by 125 nucleotides LU632_RS07075: LU632_RS07075 - phage holin family protein, at 1,342,541 to 1,342,849 _RS07075 LU632_RS07080: LU632_RS07080 - HNH endonuclease, at 1,342,893 to 1,343,378 _RS07080 LU632_RS07085: LU632_RS07085 - lysozyme, at 1,343,375 to 1,343,800 _RS07085 LU632_RS07090: LU632_RS07090 - Rz1 family lipoprotein, at 1,343,993 to 1,344,190 _RS07090 LU632_RS07095: LU632_RS07095 - hypothetical protein, at 1,344,316 to 1,345,035 _RS07095 Position (kb) 1343 1344Strain fitness (log2 ratio) -2 -1 0 1at 1342.417 kb on + strandat 1342.607 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.627 kb on + strand, within LU632_RS07075at 1342.628 kb on - strand, within LU632_RS07075at 1342.628 kb on - strand, within LU632_RS07075at 1342.748 kb on - strand, within LU632_RS07075at 1342.748 kb on - strand, within LU632_RS07075at 1342.748 kb on - strand, within LU632_RS07075at 1342.751 kb on + strand, within LU632_RS07075at 1342.752 kb on - strand, within LU632_RS07075at 1342.755 kb on - strand, within LU632_RS07075at 1342.755 kb on - strand, within LU632_RS07075at 1342.755 kb on - strand, within LU632_RS07075at 1342.890 kb on + strandat 1342.890 kb on + strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.975 kb on - strand, within LU632_RS07080at 1342.991 kb on - strand, within LU632_RS07080at 1342.991 kb on - strand, within LU632_RS07080at 1342.994 kb on + strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.252 kb on + strand, within LU632_RS07080at 1343.276 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.279 kb on - strand, within LU632_RS07080at 1343.279 kb on - strand, within LU632_RS07080at 1343.286 kb on + strand, within LU632_RS07080at 1343.318 kb on + strand, within LU632_RS07080at 1343.353 kb on - strandat 1343.354 kb on + strandat 1343.355 kb on - strandat 1343.355 kb on - strandat 1343.382 kb on + strandat 1343.382 kb on + strandat 1343.407 kb on + strandat 1343.438 kb on + strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.480 kb on - strand, within LU632_RS07085at 1343.532 kb on - strand, within LU632_RS07085at 1343.532 kb on - strand, within LU632_RS07085at 1343.694 kb on - strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.869 kb on + strandat 1343.873 kb on + strandat 1343.873 kb on + strandat 1343.874 kb on - strandat 1343.874 kb on - strandat 1343.974 kb on + strandat 1344.146 kb on - strand, within LU632_RS07090at 1344.206 kb on - strandat 1344.230 kb on - strandat 1344.271 kb on - strandat 1344.271 kb on - strandat 1344.272 kb on + strandat 1344.273 kb on - strandat 1344.440 kb on - strand, within LU632_RS07095at 1344.440 kb on - strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.449 kb on + strand, within LU632_RS07095at 1344.450 kb on - strand, within LU632_RS07095at 1344.450 kb on - strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.451 kb on + strand, within LU632_RS07095at 1344.452 kb on - strand, within LU632_RS07095at 1344.452 kb on - strand, within LU632_RS07095at 1344.532 kb on + strand, within LU632_RS07095at 1344.532 kb on + strand, within LU632_RS07095at 1344.533 kb on - strand, within LU632_RS07095at 1344.533 kb on - strand, within LU632_RS07095at 1344.562 kb on + strand, within LU632_RS07095at 1344.562 kb on + strand, within LU632_RS07095at 1344.562 kb on + strand, within LU632_RS07095at 1344.563 kb on - strand, within LU632_RS07095at 1344.627 kb on + strand, within LU632_RS07095at 1344.627 kb on + strand, within LU632_RS07095at 1344.628 kb on - strand, within LU632_RS07095at 1344.629 kb on - strand, within LU632_RS07095at 1344.720 kb on + strand, within LU632_RS07095at 1344.774 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.778 kb on + strand, within LU632_RS07095at 1344.792 kb on + strand, within LU632_RS07095at 1344.792 kb on + strand, within LU632_RS07095at 1344.793 kb on - strand, within LU632_RS07095at 1344.793 kb on - strand, within LU632_RS07095

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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1,342,417 + +0.3
1,342,607 + LU632_RS07075 0.21 -0.9
1,342,625 + LU632_RS07075 0.27 +0.8
1,342,625 + LU632_RS07075 0.27 +0.2
1,342,625 + LU632_RS07075 0.27 -0.9
1,342,625 + LU632_RS07075 0.27 -1.0
1,342,625 + LU632_RS07075 0.27 -0.2
1,342,627 + LU632_RS07075 0.28 +0.4
1,342,628 - LU632_RS07075 0.28 -0.6
1,342,628 - LU632_RS07075 0.28 +0.8
1,342,748 - LU632_RS07075 0.67 +0.4
1,342,748 - LU632_RS07075 0.67 -0.3
1,342,748 - LU632_RS07075 0.67 -0.5
1,342,751 + LU632_RS07075 0.68 +1.6
1,342,752 - LU632_RS07075 0.68 +0.4
1,342,755 - LU632_RS07075 0.69 -0.2
1,342,755 - LU632_RS07075 0.69 -0.9
1,342,755 - LU632_RS07075 0.69 +0.5
1,342,890 + -1.0
1,342,890 + +1.5
1,342,891 - +0.8
1,342,891 - +0.0
1,342,891 - -0.0
1,342,891 - -0.4
1,342,891 - -0.5
1,342,975 - LU632_RS07080 0.17 -0.7
1,342,991 - LU632_RS07080 0.20 +0.4
1,342,991 - LU632_RS07080 0.20 +0.8
1,342,994 + LU632_RS07080 0.21 -0.3
1,343,123 - LU632_RS07080 0.47 +0.1
1,343,123 - LU632_RS07080 0.47 +0.2
1,343,123 - LU632_RS07080 0.47 -0.3
1,343,252 + LU632_RS07080 0.74 +0.2
1,343,276 + LU632_RS07080 0.79 +0.0
1,343,278 + LU632_RS07080 0.79 +0.0
1,343,278 + LU632_RS07080 0.79 +0.7
1,343,278 + LU632_RS07080 0.79 -0.1
1,343,278 + LU632_RS07080 0.79 -0.2
1,343,279 - LU632_RS07080 0.79 +0.0
1,343,279 - LU632_RS07080 0.79 -0.5
1,343,286 + LU632_RS07080 0.81 +0.0
1,343,318 + LU632_RS07080 0.87 +1.6
1,343,353 - -0.3
1,343,354 + -0.2
1,343,355 - +0.7
1,343,355 - -0.2
1,343,382 + +0.7
1,343,382 + -0.2
1,343,407 + -0.2
1,343,438 + LU632_RS07085 0.15 +0.1
1,343,439 - LU632_RS07085 0.15 -0.4
1,343,439 - LU632_RS07085 0.15 +0.2
1,343,439 - LU632_RS07085 0.15 +0.9
1,343,439 - LU632_RS07085 0.15 -0.0
1,343,439 - LU632_RS07085 0.15 -0.1
1,343,480 - LU632_RS07085 0.25 +0.5
1,343,532 - LU632_RS07085 0.37 +0.4
1,343,532 - LU632_RS07085 0.37 +0.6
1,343,694 - LU632_RS07085 0.75 +0.0
1,343,729 + LU632_RS07085 0.83 +0.3
1,343,729 + LU632_RS07085 0.83 -0.5
1,343,729 + LU632_RS07085 0.83 -0.2
1,343,729 + LU632_RS07085 0.83 +0.5
1,343,730 - LU632_RS07085 0.83 +0.2
1,343,730 - LU632_RS07085 0.83 +0.0
1,343,730 - LU632_RS07085 0.83 -0.2
1,343,730 - LU632_RS07085 0.83 +0.7
1,343,869 + +0.3
1,343,873 + +1.0
1,343,873 + -1.5
1,343,874 - +0.4
1,343,874 - +0.3
1,343,974 + +0.8
1,344,146 - LU632_RS07090 0.77 +0.4
1,344,206 - +0.2
1,344,230 - -0.2
1,344,271 - -0.7
1,344,271 - +1.1
1,344,272 + -1.2
1,344,273 - -0.2
1,344,440 - LU632_RS07095 0.17 +0.4
1,344,440 - LU632_RS07095 0.17 -0.9
1,344,449 + LU632_RS07095 0.18 -0.1
1,344,449 + LU632_RS07095 0.18 -0.9
1,344,449 + LU632_RS07095 0.18 +0.5
1,344,449 + LU632_RS07095 0.18 -0.1
1,344,449 + LU632_RS07095 0.18 -1.3
1,344,450 - LU632_RS07095 0.19 +0.2
1,344,450 - LU632_RS07095 0.19 -0.4
1,344,451 + LU632_RS07095 0.19 -0.2
1,344,451 + LU632_RS07095 0.19 +0.3
1,344,451 + LU632_RS07095 0.19 +0.8
1,344,451 + LU632_RS07095 0.19 -0.1
1,344,452 - LU632_RS07095 0.19 -0.5
1,344,452 - LU632_RS07095 0.19 +0.6
1,344,532 + LU632_RS07095 0.30 +1.2
1,344,532 + LU632_RS07095 0.30 +0.3
1,344,533 - LU632_RS07095 0.30 -2.2
1,344,533 - LU632_RS07095 0.30 +0.8
1,344,562 + LU632_RS07095 0.34 -0.3
1,344,562 + LU632_RS07095 0.34 +0.1
1,344,562 + LU632_RS07095 0.34 +0.2
1,344,563 - LU632_RS07095 0.34 +0.0
1,344,627 + LU632_RS07095 0.43 -0.0
1,344,627 + LU632_RS07095 0.43 +0.0
1,344,628 - LU632_RS07095 0.43 -0.5
1,344,629 - LU632_RS07095 0.43 -1.8
1,344,720 + LU632_RS07095 0.56 -0.5
1,344,774 + LU632_RS07095 0.64 +1.2
1,344,778 + LU632_RS07095 0.64 -0.5
1,344,778 + LU632_RS07095 0.64 -0.0
1,344,778 + LU632_RS07095 0.64 +0.4
1,344,778 + LU632_RS07095 0.64 +0.9
1,344,792 + LU632_RS07095 0.66 -0.2
1,344,792 + LU632_RS07095 0.66 -0.4
1,344,793 - LU632_RS07095 0.66 -1.8
1,344,793 - LU632_RS07095 0.66 -0.6

Or see this region's nucleotide sequence