Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03295 and LU632_RS03300 are separated by 160 nucleotides LU632_RS03300 and LU632_RS03305 are separated by 65 nucleotides
LU632_RS03295: LU632_RS03295 - aminoimidazole riboside kinase, at 674,885 to 675,802
_RS03295
LU632_RS03300: LU632_RS03300 - carbohydrate porin, at 675,963 to 677,525
_RS03300
LU632_RS03305: LU632_RS03305 - sucrose-specific PTS transporter subunit IIBC, at 677,591 to 678,961
_RS03305
Position (kb) 675
676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.026 kb on - strand, within LU632_RS03295 at 675.061 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.091 kb on - strand, within LU632_RS03295 at 675.095 kb on - strand, within LU632_RS03295 at 675.095 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.175 kb on + strand, within LU632_RS03295 at 675.175 kb on + strand, within LU632_RS03295 at 675.208 kb on + strand, within LU632_RS03295 at 675.236 kb on - strand, within LU632_RS03295 at 675.463 kb on + strand, within LU632_RS03295 at 675.464 kb on - strand, within LU632_RS03295 at 675.584 kb on + strand, within LU632_RS03295 at 675.584 kb on + strand, within LU632_RS03295 at 675.585 kb on - strand, within LU632_RS03295 at 675.585 kb on - strand, within LU632_RS03295 at 675.833 kb on - strand at 675.883 kb on - strand at 676.006 kb on + strand at 676.049 kb on + strand at 676.049 kb on + strand at 676.425 kb on + strand, within LU632_RS03300 at 676.426 kb on - strand, within LU632_RS03300 at 676.426 kb on - strand, within LU632_RS03300 at 676.512 kb on - strand, within LU632_RS03300 at 676.516 kb on - strand, within LU632_RS03300 at 676.516 kb on - strand, within LU632_RS03300 at 676.710 kb on + strand, within LU632_RS03300 at 676.711 kb on - strand, within LU632_RS03300 at 676.755 kb on + strand, within LU632_RS03300 at 676.756 kb on - strand, within LU632_RS03300 at 676.764 kb on - strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.807 kb on + strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.847 kb on + strand, within LU632_RS03300 at 676.848 kb on - strand, within LU632_RS03300 at 676.910 kb on + strand, within LU632_RS03300 at 676.910 kb on + strand, within LU632_RS03300 at 676.971 kb on + strand, within LU632_RS03300 at 676.971 kb on + strand, within LU632_RS03300 at 676.972 kb on - strand, within LU632_RS03300 at 677.143 kb on + strand, within LU632_RS03300 at 677.187 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.259 kb on - strand, within LU632_RS03300 at 677.259 kb on - strand, within LU632_RS03300 at 677.262 kb on + strand, within LU632_RS03300 at 677.262 kb on + strand, within LU632_RS03300 at 677.263 kb on - strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.303 kb on + strand, within LU632_RS03300 at 677.325 kb on + strand, within LU632_RS03300 at 677.328 kb on - strand, within LU632_RS03300 at 677.328 kb on - strand, within LU632_RS03300 at 677.365 kb on + strand, within LU632_RS03300 at 677.440 kb on - strand at 677.440 kb on - strand at 677.440 kb on - strand at 677.475 kb on - strand at 677.558 kb on + strand at 677.562 kb on + strand at 677.562 kb on + strand at 677.647 kb on + strand at 677.648 kb on - strand at 677.803 kb on + strand, within LU632_RS03305 at 677.924 kb on - strand, within LU632_RS03305 at 677.938 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.027 kb on - strand, within LU632_RS03305 at 678.029 kb on - strand, within LU632_RS03305 at 678.359 kb on - strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.419 kb on - strand, within LU632_RS03305 at 678.489 kb on - strand, within LU632_RS03305 at 678.514 kb on - strand, within LU632_RS03305
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 675,026 - LU632_RS03295 0.15 -1.2 675,061 + LU632_RS03295 0.19 -0.2 675,090 + LU632_RS03295 0.22 +0.2 675,090 + LU632_RS03295 0.22 +2.2 675,090 + LU632_RS03295 0.22 -1.0 675,091 - LU632_RS03295 0.22 -0.8 675,095 - LU632_RS03295 0.23 -2.2 675,095 - LU632_RS03295 0.23 -1.0 675,104 - LU632_RS03295 0.24 -0.1 675,104 - LU632_RS03295 0.24 -0.5 675,104 - LU632_RS03295 0.24 -0.7 675,104 - LU632_RS03295 0.24 -0.1 675,175 + LU632_RS03295 0.32 -0.3 675,175 + LU632_RS03295 0.32 -0.6 675,208 + LU632_RS03295 0.35 -0.2 675,236 - LU632_RS03295 0.38 -0.8 675,463 + LU632_RS03295 0.63 -0.7 675,464 - LU632_RS03295 0.63 -0.8 675,584 + LU632_RS03295 0.76 -0.2 675,584 + LU632_RS03295 0.76 +0.4 675,585 - LU632_RS03295 0.76 -1.4 675,585 - LU632_RS03295 0.76 -1.2 675,833 - -0.6 675,883 - +1.2 676,006 + +0.2 676,049 + -0.0 676,049 + -0.0 676,425 + LU632_RS03300 0.30 +0.6 676,426 - LU632_RS03300 0.30 -0.5 676,426 - LU632_RS03300 0.30 -1.2 676,512 - LU632_RS03300 0.35 +0.4 676,516 - LU632_RS03300 0.35 +0.1 676,516 - LU632_RS03300 0.35 +0.1 676,710 + LU632_RS03300 0.48 -0.2 676,711 - LU632_RS03300 0.48 +0.4 676,755 + LU632_RS03300 0.51 +0.4 676,756 - LU632_RS03300 0.51 +0.2 676,764 - LU632_RS03300 0.51 -0.5 676,806 + LU632_RS03300 0.54 -0.9 676,806 + LU632_RS03300 0.54 -0.3 676,806 + LU632_RS03300 0.54 +0.1 676,807 + LU632_RS03300 0.54 +0.2 676,807 - LU632_RS03300 0.54 +0.2 676,807 - LU632_RS03300 0.54 -0.0 676,807 - LU632_RS03300 0.54 +0.3 676,807 - LU632_RS03300 0.54 -0.1 676,847 + LU632_RS03300 0.57 -0.6 676,848 - LU632_RS03300 0.57 +0.7 676,910 + LU632_RS03300 0.61 +0.5 676,910 + LU632_RS03300 0.61 -0.7 676,971 + LU632_RS03300 0.64 +0.3 676,971 + LU632_RS03300 0.64 -1.1 676,972 - LU632_RS03300 0.65 -0.2 677,143 + LU632_RS03300 0.75 +0.6 677,187 + LU632_RS03300 0.78 -0.4 677,258 + LU632_RS03300 0.83 -0.8 677,258 + LU632_RS03300 0.83 -0.2 677,258 + LU632_RS03300 0.83 +0.3 677,259 - LU632_RS03300 0.83 +0.5 677,259 - LU632_RS03300 0.83 +2.2 677,262 + LU632_RS03300 0.83 -0.3 677,262 + LU632_RS03300 0.83 +0.0 677,263 - LU632_RS03300 0.83 +0.3 677,268 + LU632_RS03300 0.83 -1.0 677,268 + LU632_RS03300 0.83 +1.2 677,268 + LU632_RS03300 0.83 -2.0 677,268 + LU632_RS03300 0.83 +0.0 677,268 + LU632_RS03300 0.83 +0.5 677,303 + LU632_RS03300 0.86 +0.1 677,325 + LU632_RS03300 0.87 +0.5 677,328 - LU632_RS03300 0.87 -0.3 677,328 - LU632_RS03300 0.87 +1.7 677,365 + LU632_RS03300 0.90 -1.2 677,440 - +0.1 677,440 - +0.4 677,440 - +0.2 677,475 - -0.4 677,558 + +0.2 677,562 + -0.6 677,562 + -1.0 677,647 + -1.0 677,648 - -1.1 677,803 + LU632_RS03305 0.15 -0.1 677,924 - LU632_RS03305 0.24 +0.2 677,938 + LU632_RS03305 0.25 -0.1 678,026 + LU632_RS03305 0.32 -0.4 678,026 + LU632_RS03305 0.32 -1.0 678,027 - LU632_RS03305 0.32 -0.2 678,029 - LU632_RS03305 0.32 +0.3 678,359 - LU632_RS03305 0.56 -0.1 678,418 + LU632_RS03305 0.60 -0.3 678,418 + LU632_RS03305 0.60 -0.2 678,419 - LU632_RS03305 0.60 +0.3 678,489 - LU632_RS03305 0.65 -0.5 678,514 - LU632_RS03305 0.67 -0.2
Or see this region's nucleotide sequence