Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17095

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,217,845	+		LU632_RS17085	0.70	+0.8
3,217,846	-		LU632_RS17085	0.70	-1.4
3,217,898	+		LU632_RS17085	0.75	-0.6
3,217,914	-		LU632_RS17085	0.76	-0.3
3,217,961	+		LU632_RS17085	0.80	+1.0
3,218,078	+				-0.0
3,218,158	-				+0.4
3,218,171	+				-0.4
3,218,171	+				+3.2
3,218,172	-				-0.3
3,218,183	-				-0.6
3,218,355	-		LU632_RS17090	0.42	-0.0
3,218,355	-		LU632_RS17090	0.42	-1.0
3,218,608	-				+0.3
3,218,707	+		LU632_RS17095	0.14	-0.9
3,218,708	-		LU632_RS17095	0.14	-1.1
3,218,753	+		LU632_RS17095	0.22	+0.2
3,218,753	+		LU632_RS17095	0.22	-0.9
3,218,819	+		LU632_RS17095	0.33	+0.9
3,218,820	-		LU632_RS17095	0.33	+2.6
3,218,921	+		LU632_RS17095	0.50	+0.0
3,218,921	+		LU632_RS17095	0.50	+0.4
3,219,105	-		LU632_RS17095	0.82	-1.6
3,219,105	-		LU632_RS17095	0.82	+1.7
3,219,105	-		LU632_RS17095	0.82	-0.6
3,219,105	-		LU632_RS17095	0.82	+3.5
3,219,179	+				-1.1
3,219,179	+				+1.2
3,219,180	-				-0.4
3,219,180	-				-1.1
3,219,189	+				-1.1
3,219,189	+				+1.7
3,219,190	-				-2.0
3,219,654	+		LU632_RS17100	0.41	-0.1
3,219,654	+		LU632_RS17100	0.41	-0.3
3,219,655	-		LU632_RS17100	0.42	-2.5
3,219,655	-		LU632_RS17100	0.42	+2.2
3,219,655	-		LU632_RS17100	0.42	-1.1
3,219,783	+		LU632_RS17100	0.53	+0.3
3,219,783	+		LU632_RS17100	0.53	+0.1