Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01595 and gpM are separated by 45 nucleotides gpM and LU632_RS01605 are separated by 96 nucleotides LU632_RS01605 and LU632_RS01610 overlap by 1 nucleotides LU632_RS01610 and LU632_RS01615 overlap by 10 nucleotides LU632_RS01615 and LU632_RS01620 overlap by 17 nucleotides
LU632_RS01595: LU632_RS01595 - phage major capsid protein, P2 family, at 319,621 to 320,670
_RS01595
LU632_RS01600: gpM - phage terminase small subunit, at 320,716 to 321,573
gpM
LU632_RS01605: LU632_RS01605 - head completion/stabilization protein, at 321,670 to 322,194
_RS01605
LU632_RS01610: LU632_RS01610 - tail protein X, at 322,194 to 322,394
_RS01610
LU632_RS01615: LU632_RS01615 - hypothetical protein, at 322,385 to 322,687
_RS01615
LU632_RS01620: LU632_RS01620 - lysozyme, at 322,671 to 323,216
_RS01620
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 320.720 kb on + strand at 320.833 kb on - strand, within gpM at 321.005 kb on - strand, within gpM at 321.031 kb on + strand, within gpM at 321.031 kb on + strand, within gpM at 321.032 kb on - strand, within gpM at 321.207 kb on + strand, within gpM at 321.207 kb on + strand, within gpM at 321.208 kb on - strand, within gpM at 321.208 kb on - strand, within gpM at 321.610 kb on + strand at 321.665 kb on + strand at 321.690 kb on + strand at 321.690 kb on + strand at 321.691 kb on - strand at 321.935 kb on + strand, within LU632_RS01605 at 321.935 kb on + strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 322.282 kb on + strand, within LU632_RS01610 at 322.283 kb on - strand, within LU632_RS01610 at 322.378 kb on + strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.774 kb on + strand, within LU632_RS01620 at 322.797 kb on - strand, within LU632_RS01620 at 322.797 kb on - strand, within LU632_RS01620 at 322.872 kb on + strand, within LU632_RS01620 at 322.931 kb on + strand, within LU632_RS01620 at 322.932 kb on - strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.958 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.012 kb on + strand, within LU632_RS01620 at 323.013 kb on - strand, within LU632_RS01620 at 323.063 kb on + strand, within LU632_RS01620 at 323.084 kb on - strand, within LU632_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 320,720 + +1.5 320,833 - gpM LU632_RS01600 0.14 -1.4 321,005 - gpM LU632_RS01600 0.34 -0.7 321,031 + gpM LU632_RS01600 0.37 -0.9 321,031 + gpM LU632_RS01600 0.37 +0.5 321,032 - gpM LU632_RS01600 0.37 -0.5 321,207 + gpM LU632_RS01600 0.57 -1.0 321,207 + gpM LU632_RS01600 0.57 +1.1 321,208 - gpM LU632_RS01600 0.57 -0.8 321,208 - gpM LU632_RS01600 0.57 +1.0 321,610 + -1.0 321,665 + -0.4 321,690 + -1.5 321,690 + +0.8 321,691 - -0.4 321,935 + LU632_RS01605 0.50 +1.0 321,935 + LU632_RS01605 0.50 +0.7 321,936 - LU632_RS01605 0.51 +0.8 321,936 - LU632_RS01605 0.51 -1.0 321,936 - LU632_RS01605 0.51 +1.6 321,936 - LU632_RS01605 0.51 -0.5 322,282 + LU632_RS01610 0.44 +0.5 322,283 - LU632_RS01610 0.44 -0.1 322,378 + -1.6 322,379 - +1.0 322,379 - -1.5 322,379 - +0.5 322,774 + LU632_RS01620 0.19 +1.2 322,797 - LU632_RS01620 0.23 -1.0 322,797 - LU632_RS01620 0.23 -1.0 322,872 + LU632_RS01620 0.37 +0.3 322,931 + LU632_RS01620 0.48 -2.3 322,932 - LU632_RS01620 0.48 +2.0 322,956 + LU632_RS01620 0.52 +0.9 322,956 + LU632_RS01620 0.52 +0.1 322,956 + LU632_RS01620 0.52 -1.2 322,957 - LU632_RS01620 0.52 -0.8 322,957 - LU632_RS01620 0.52 +3.0 322,957 - LU632_RS01620 0.52 -0.7 322,957 - LU632_RS01620 0.52 -0.8 322,957 - LU632_RS01620 0.52 +0.0 322,958 + LU632_RS01620 0.53 +0.4 323,005 + LU632_RS01620 0.61 +0.8 323,005 + LU632_RS01620 0.61 +1.4 323,005 + LU632_RS01620 0.61 +2.4 323,006 - LU632_RS01620 0.61 +0.2 323,006 - LU632_RS01620 0.61 +0.2 323,006 - LU632_RS01620 0.61 +0.7 323,006 - LU632_RS01620 0.61 -1.6 323,012 + LU632_RS01620 0.62 -0.6 323,013 - LU632_RS01620 0.63 +0.6 323,063 + LU632_RS01620 0.72 -0.7 323,084 - LU632_RS01620 0.76 +0.7
Or see this region's nucleotide sequence