Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4432

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
5,299,734	+		Psyr_4431	0.25	-0.7
5,299,922	+		Psyr_4431	0.48	-0.2
5,299,923	-		Psyr_4431	0.48	+0.8
5,299,946	+		Psyr_4431	0.50	-0.8
5,299,946	+		Psyr_4431	0.50	+1.3
5,299,946	+		Psyr_4431	0.50	+0.8
5,299,946	+		Psyr_4431	0.50	-2.8
5,299,946	+		Psyr_4431	0.50	+0.5
5,299,946	+		Psyr_4431	0.50	+2.8
5,299,946	+		Psyr_4431	0.50	-1.8
5,299,947	-		Psyr_4431	0.51	+0.8
5,299,947	-		Psyr_4431	0.51	+0.2
5,299,947	-		Psyr_4431	0.51	+1.1
5,299,947	-		Psyr_4431	0.51	+0.8
5,299,947	-		Psyr_4431	0.51	-0.6
5,299,947	-		Psyr_4431	0.51	-0.8
5,299,947	-		Psyr_4431	0.51	+1.8
5,300,382	+				-2.6
5,300,382	+				-1.6
5,300,383	-				-1.2
5,300,383	-				+0.8
5,300,394	+				-0.8
5,300,394	+				-2.6
5,300,394	+				-0.4
5,300,394	+				-2.0
5,300,394	+				+3.4
5,300,394	+				+0.8
5,300,395	-				-0.2
5,300,395	-				-2.2
5,300,395	-				+0.8
5,300,425	+				-1.2
5,300,425	+				+1.9
5,300,425	+				+3.5
5,300,426	-				-1.2
5,300,426	-				+0.0
5,300,429	+				+1.4
5,300,429	+				-0.8
5,300,429	+				-0.8
5,300,429	+				-0.8
5,300,429	+				-1.6
5,300,429	+				-0.2
5,300,429	+				-1.6
5,300,429	+				-1.7
5,300,429	+				-0.1
5,300,429	+				+3.2
5,300,429	+				+0.8
5,300,429	+				+1.4
5,300,429	+				+2.0
5,300,429	+				-1.6
5,300,429	+				-1.6
5,300,429	+				+3.0
5,300,429	+				+2.3
5,300,429	+				-2.2
5,300,429	+				-1.9
5,300,429	+				+3.4
5,300,430	-				+0.1
5,300,430	-				+1.8
5,300,430	-				+2.2
5,300,430	-				-0.2
5,300,430	-				-3.1
5,300,430	-				-2.8
5,300,430	-				-1.2
5,300,430	-				+0.4
5,300,430	-				-2.0
5,300,430	-				-0.2
5,300,430	-				+1.8
5,300,430	-				-3.9
5,300,430	-				+1.1
5,300,430	-				-0.4
5,300,430	-				-0.2
5,300,430	-				+3.6
5,300,430	-				+1.4
5,300,516	-				+0.5
5,300,537	+				+0.0
5,300,537	+				-1.8
5,300,538	-				-0.0
5,300,600	+				+2.6
5,300,600	+				+0.5
5,300,600	+				+0.8
5,300,600	+				+3.9
5,300,600	+				-0.8
5,300,600	+				-2.4
5,300,600	+				-2.8
5,300,600	+				-2.0
5,300,600	+				-3.2
5,300,600	+				+2.5
5,300,600	+				-2.2
5,300,600	+				-0.2
5,300,601	-				+3.4
5,300,601	-				-0.2
5,300,601	-				+1.8
5,300,601	-				-1.2
5,300,601	-				+4.2
5,300,601	-				+0.8
5,300,601	-				+0.4
5,300,601	-				+2.3
5,300,601	-				-1.2
5,300,601	-				+1.1
5,300,601	-				-1.8
5,300,601	-				-0.2
5,300,601	-				+3.0
5,300,601	-				+3.7
5,300,601	-				+0.1
5,300,602	+				-2.0
5,300,602	+				-2.2
5,300,602	+				+3.2
5,300,602	+				+2.4
5,300,602	+				-1.2
5,300,602	+				-0.1
5,300,602	+				+0.2
5,300,602	+				+0.0
5,300,602	+				-2.0
5,300,602	+				+0.9
5,300,602	+				+3.8
5,300,602	+				-2.6
5,300,602	+				-0.8
5,300,602	+				-0.8
5,300,602	+				+3.3
5,300,602	+				-0.1
5,300,602	+				+0.8
5,300,602	+				-1.8
5,300,602	+				+6.2
5,300,602	+				+0.9
5,300,602	+				-1.6
5,300,602	+				-1.2
5,300,602	+				+0.4
5,300,602	+				+0.8
5,300,602	+				-1.6
5,300,602	+				+1.6
5,300,602	+				-2.6
5,300,602	+				+0.3
5,300,603	-				+2.1
5,300,603	-				+2.5
5,300,603	-				+0.8
5,300,603	-				+3.1
5,300,603	-				-2.5
5,300,603	-				-0.6
5,300,603	-				-1.8
5,300,603	-				+1.4
5,300,603	-				+0.5
5,300,603	-				-2.2
5,300,603	-				-1.8
5,300,603	-				-0.8
5,300,603	-				-1.7
5,300,603	-				-0.8
5,300,603	-				-1.8
5,300,603	-				+2.0
5,300,603	-				-2.0
5,300,603	-				-2.4
5,300,603	-				+0.2
5,300,603	-				+0.8
5,300,603	-				-0.6
5,300,603	-				+1.4
5,300,603	-				+0.4
5,300,603	-				-0.8
5,300,603	-				-0.2
5,300,603	-				+0.3
5,300,603	-				-1.6
5,300,606	+				-1.8
5,300,606	+				-3.5
5,300,607	-				-1.8
5,300,607	-				+1.8
5,300,607	-				-2.0
5,300,778	+		Psyr_4432	0.37	-3.5
5,300,778	+		Psyr_4432	0.37	+1.4
5,300,778	+		Psyr_4432	0.37	+2.4
5,300,778	+		Psyr_4432	0.37	-0.7
5,300,778	+		Psyr_4432	0.37	+3.0
5,300,778	+		Psyr_4432	0.37	-0.0
5,300,778	+		Psyr_4432	0.37	+0.4
5,300,778	+		Psyr_4432	0.37	+0.8
5,300,778	+		Psyr_4432	0.37	+1.0
5,300,778	+		Psyr_4432	0.37	-1.2
5,300,778	+		Psyr_4432	0.37	+0.5
5,300,778	+		Psyr_4432	0.37	-1.6
5,300,779	-		Psyr_4432	0.37	+1.4
5,300,779	-		Psyr_4432	0.37	-1.8
5,300,779	-		Psyr_4432	0.37	+1.9
5,300,779	-		Psyr_4432	0.37	+2.4
5,300,779	-		Psyr_4432	0.37	-0.2
5,300,779	-		Psyr_4432	0.37	+0.0
5,300,779	-		Psyr_4432	0.37	+2.6
5,300,779	-		Psyr_4432	0.37	-0.8
5,300,883	-		Psyr_4432	0.71	-0.8
5,301,037	+		Psyr_4433	0.10	+1.1
5,301,037	+		Psyr_4433	0.10	-0.4
5,301,037	+		Psyr_4433	0.10	-3.4
5,301,037	+		Psyr_4433	0.10	-2.2
5,301,037	+		Psyr_4433	0.10	-1.8
5,301,037	+		Psyr_4433	0.10	+2.4
5,301,037	+		Psyr_4433	0.10	+0.2
5,301,038	-		Psyr_4433	0.10	-2.9
5,301,038	-		Psyr_4433	0.10	-0.4
5,301,038	-		Psyr_4433	0.10	-2.6
5,301,038	-		Psyr_4433	0.10	+0.9
5,301,038	-		Psyr_4433	0.10	+0.8
5,301,038	-		Psyr_4433	0.10	+0.8
5,301,038	-		Psyr_4433	0.10	-1.2
5,301,038	-		Psyr_4433	0.10	-0.8
5,301,038	-		Psyr_4433	0.10	+2.2
5,301,038	-		Psyr_4433	0.10	+1.2
5,301,038	-		Psyr_4433	0.10	-1.4
5,301,038	-		Psyr_4433	0.10	-0.2
5,301,038	-		Psyr_4433	0.10	-0.2
5,301,113	-		Psyr_4433	0.24	+6.0
5,301,225	+		Psyr_4433	0.44	+3.4
5,301,244	+		Psyr_4433	0.47	-0.8
5,301,244	+		Psyr_4433	0.47	+1.2
5,301,244	+		Psyr_4433	0.47	-2.4
5,301,244	+		Psyr_4433	0.47	-0.8
5,301,244	+		Psyr_4433	0.47	+2.6
5,301,244	+		Psyr_4433	0.47	+0.8
5,301,245	-		Psyr_4433	0.47	-2.0
5,301,245	-		Psyr_4433	0.47	-1.6
5,301,245	-		Psyr_4433	0.47	-2.2
5,301,245	-		Psyr_4433	0.47	+1.8
5,301,245	-		Psyr_4433	0.47	-2.2
5,301,245	-		Psyr_4433	0.47	-1.6
5,301,535	+				+2.7
5,301,686	+		Psyr_4434	0.26	-1.2
5,301,686	+		Psyr_4434	0.26	+2.2
5,301,687	-		Psyr_4434	0.26	+1.4
5,301,687	-		Psyr_4434	0.26	-0.2
5,301,969	-		Psyr_4434	0.79	-2.1
5,301,969	-		Psyr_4434	0.79	-2.8
5,301,969	-		Psyr_4434	0.79	+0.6
5,301,969	-		Psyr_4434	0.79	+1.5