Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01420

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01415 and ABZR87_RS01420 are separated by 122 nucleotidesABZR87_RS01420 and ABZR87_RS01425 are separated by 152 nucleotidesABZR87_RS01425 and ABZR87_RS01430 are separated by 72 nucleotides ABZR87_RS01415: ABZR87_RS01415 - 4-hydroxy-tetrahydrodipicolinate reductase, at 297,605 to 298,396 _RS01415 ABZR87_RS01420: ABZR87_RS01420 - outer membrane protein assembly factor BamE, at 298,519 to 299,175 _RS01420 ABZR87_RS01425: ABZR87_RS01425 - ferric iron uptake transcriptional regulator, at 299,328 to 299,759 _RS01425 ABZR87_RS01430: ABZR87_RS01430 - LysR family transcriptional regulator, at 299,832 to 300,875 _RS01430 Position (kb) 298 299 300Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 298.436 kb on + strandat 298.436 kb on + strandat 298.560 kb on + strandat 298.560 kb on + strandat 298.561 kb on - strandat 298.561 kb on - strandat 298.561 kb on - strandat 298.561 kb on - strandat 298.878 kb on - strand, within ABZR87_RS01420at 298.878 kb on - strand, within ABZR87_RS01420at 299.060 kb on + strand, within ABZR87_RS01420at 299.061 kb on - strand, within ABZR87_RS01420at 299.061 kb on - strand, within ABZR87_RS01420at 299.207 kb on - strandat 299.212 kb on + strandat 299.261 kb on - strandat 299.308 kb on + strandat 299.308 kb on + strandat 299.308 kb on + strandat 299.309 kb on - strandat 299.309 kb on - strandat 299.313 kb on + strandat 299.442 kb on + strand, within ABZR87_RS01425at 299.442 kb on + strand, within ABZR87_RS01425at 299.443 kb on - strand, within ABZR87_RS01425at 299.490 kb on + strand, within ABZR87_RS01425at 299.490 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.562 kb on + strand, within ABZR87_RS01425at 299.563 kb on - strand, within ABZR87_RS01425at 299.563 kb on - strand, within ABZR87_RS01425at 299.563 kb on - strand, within ABZR87_RS01425at 299.563 kb on - strand, within ABZR87_RS01425at 299.713 kb on - strand, within ABZR87_RS01425at 299.953 kb on + strand, within ABZR87_RS01430at 299.953 kb on + strand, within ABZR87_RS01430at 300.008 kb on + strand, within ABZR87_RS01430at 300.008 kb on + strand, within ABZR87_RS01430at 300.008 kb on + strand, within ABZR87_RS01430at 300.008 kb on + strand, within ABZR87_RS01430at 300.008 kb on + strand, within ABZR87_RS01430at 300.009 kb on - strand, within ABZR87_RS01430at 300.009 kb on - strand, within ABZR87_RS01430at 300.009 kb on - strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.088 kb on + strand, within ABZR87_RS01430at 300.089 kb on - strand, within ABZR87_RS01430at 300.089 kb on - strand, within ABZR87_RS01430at 300.089 kb on - strand, within ABZR87_RS01430at 300.089 kb on - strand, within ABZR87_RS01430at 300.104 kb on + strand, within ABZR87_RS01430at 300.104 kb on + strand, within ABZR87_RS01430at 300.104 kb on + strand, within ABZR87_RS01430at 300.104 kb on + strand, within ABZR87_RS01430at 300.105 kb on - strand, within ABZR87_RS01430at 300.105 kb on - strand, within ABZR87_RS01430at 300.105 kb on - strand, within ABZR87_RS01430at 300.105 kb on - strand, within ABZR87_RS01430

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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298,436 + -2.1
298,436 + -1.0
298,560 + -1.8
298,560 + -0.3
298,561 - -1.2
298,561 - -0.9
298,561 - -0.8
298,561 - -0.7
298,878 - ABZR87_RS01420 0.55 -0.3
298,878 - ABZR87_RS01420 0.55 -0.5
299,060 + ABZR87_RS01420 0.82 +0.5
299,061 - ABZR87_RS01420 0.82 -0.7
299,061 - ABZR87_RS01420 0.82 -1.1
299,207 - +0.9
299,212 + -0.5
299,261 - +0.3
299,308 + +1.3
299,308 + -1.2
299,308 + +1.1
299,309 - -1.3
299,309 - +0.5
299,313 + +0.5
299,442 + ABZR87_RS01425 0.26 +0.9
299,442 + ABZR87_RS01425 0.26 -0.8
299,443 - ABZR87_RS01425 0.27 +0.8
299,490 + ABZR87_RS01425 0.38 +1.3
299,490 + ABZR87_RS01425 0.38 +1.0
299,562 + ABZR87_RS01425 0.54 -0.2
299,562 + ABZR87_RS01425 0.54 +1.2
299,562 + ABZR87_RS01425 0.54 +0.8
299,562 + ABZR87_RS01425 0.54 +1.8
299,562 + ABZR87_RS01425 0.54 -0.3
299,562 + ABZR87_RS01425 0.54 +2.8
299,562 + ABZR87_RS01425 0.54 +0.2
299,563 - ABZR87_RS01425 0.54 +0.0
299,563 - ABZR87_RS01425 0.54 +0.4
299,563 - ABZR87_RS01425 0.54 +2.8
299,563 - ABZR87_RS01425 0.54 +0.0
299,713 - ABZR87_RS01425 0.89 +0.0
299,953 + ABZR87_RS01430 0.12 -1.3
299,953 + ABZR87_RS01430 0.12 +0.2
300,008 + ABZR87_RS01430 0.17 +3.2
300,008 + ABZR87_RS01430 0.17 +2.8
300,008 + ABZR87_RS01430 0.17 +1.7
300,008 + ABZR87_RS01430 0.17 +1.8
300,008 + ABZR87_RS01430 0.17 +2.5
300,009 - ABZR87_RS01430 0.17 +3.5
300,009 - ABZR87_RS01430 0.17 +1.6
300,009 - ABZR87_RS01430 0.17 +4.1
300,088 + ABZR87_RS01430 0.25 +4.1
300,088 + ABZR87_RS01430 0.25 +4.1
300,088 + ABZR87_RS01430 0.25 +2.7
300,088 + ABZR87_RS01430 0.25 +4.6
300,088 + ABZR87_RS01430 0.25 +2.5
300,088 + ABZR87_RS01430 0.25 +4.0
300,088 + ABZR87_RS01430 0.25 +3.7
300,089 - ABZR87_RS01430 0.25 +3.9
300,089 - ABZR87_RS01430 0.25 +3.0
300,089 - ABZR87_RS01430 0.25 +3.1
300,089 - ABZR87_RS01430 0.25 +4.2
300,104 + ABZR87_RS01430 0.26 +1.8
300,104 + ABZR87_RS01430 0.26 +2.5
300,104 + ABZR87_RS01430 0.26 +2.3
300,104 + ABZR87_RS01430 0.26 +3.3
300,105 - ABZR87_RS01430 0.26 +3.4
300,105 - ABZR87_RS01430 0.26 +2.9
300,105 - ABZR87_RS01430 0.26 +4.4
300,105 - ABZR87_RS01430 0.26 +2.9

Or see this region's nucleotide sequence