Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2761

Experiment: Magnesium chloride 0.125 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2758 and Pf6N2E2_2759 overlap by 32 nucleotidesPf6N2E2_2759 and Pf6N2E2_2760 overlap by 17 nucleotidesPf6N2E2_2760 and Pf6N2E2_2761 overlap by 22 nucleotidesPf6N2E2_2761 and Pf6N2E2_2762 overlap by 36 nucleotidesPf6N2E2_2762 and Pf6N2E2_2763 are separated by 35 nucleotides Pf6N2E2_2758 - L-aspartate oxidase (EC 1.4.3.16), at 3,249,429 to 3,250,991 _2758 Pf6N2E2_2759 - FIG00955375: hypothetical protein, at 3,250,960 to 3,251,412 _2759 Pf6N2E2_2760 - YgfY COG2938, at 3,251,396 to 3,251,650 _2760 Pf6N2E2_2761 - hypothetical protein, at 3,251,629 to 3,251,835 _2761 Pf6N2E2_2762 - Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress, at 3,251,800 to 3,252,741 _2762 Pf6N2E2_2763 - Predicted signal transduction protein, at 3,252,777 to 3,253,598 _2763 Position (kb) 3251 3252Strain fitness (log2 ratio) -2 -1 0 1 2at 3250.702 kb on + strand, within Pf6N2E2_2758at 3250.703 kb on - strand, within Pf6N2E2_2758at 3250.722 kb on + strand, within Pf6N2E2_2758at 3250.722 kb on + strand, within Pf6N2E2_2758at 3250.722 kb on + strand, within Pf6N2E2_2758at 3250.722 kb on + strand, within Pf6N2E2_2758at 3250.723 kb on - strand, within Pf6N2E2_2758at 3250.723 kb on - strandat 3250.806 kb on + strand, within Pf6N2E2_2758at 3250.806 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.815 kb on + strand, within Pf6N2E2_2758at 3250.816 kb on - strand, within Pf6N2E2_2758at 3250.816 kb on - strand, within Pf6N2E2_2758at 3250.816 kb on - strand, within Pf6N2E2_2758at 3250.816 kb on - strand, within Pf6N2E2_2758at 3250.816 kb on - strand, within Pf6N2E2_2758at 3250.817 kb on + strand, within Pf6N2E2_2758at 3250.817 kb on + strand, within Pf6N2E2_2758at 3250.817 kb on + strand, within Pf6N2E2_2758at 3250.817 kb on + strand, within Pf6N2E2_2758at 3250.817 kb on + strand, within Pf6N2E2_2758at 3250.818 kb on - strand, within Pf6N2E2_2758at 3250.818 kb on - strand, within Pf6N2E2_2758at 3250.818 kb on - strand, within Pf6N2E2_2758at 3250.917 kb on + strandat 3250.917 kb on + strandat 3250.917 kb on + strandat 3250.917 kb on + strandat 3250.918 kb on - strandat 3250.918 kb on - strandat 3250.961 kb on + strandat 3250.962 kb on - strandat 3250.980 kb on + strandat 3250.980 kb on + strandat 3250.981 kb on - strandat 3251.187 kb on + strand, within Pf6N2E2_2759at 3251.232 kb on - strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.269 kb on + strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.270 kb on - strand, within Pf6N2E2_2759at 3251.348 kb on + strand, within Pf6N2E2_2759at 3251.348 kb on + strand, within Pf6N2E2_2759at 3251.349 kb on - strand, within Pf6N2E2_2759at 3251.397 kb on + strandat 3251.397 kb on + strandat 3251.397 kb on + strandat 3251.398 kb on - strandat 3251.398 kb on - strandat 3251.398 kb on - strandat 3251.398 kb on - strandat 3251.398 kb on - strandat 3251.667 kb on - strand, within Pf6N2E2_2761at 3251.667 kb on - strand, within Pf6N2E2_2761at 3251.678 kb on - strand, within Pf6N2E2_2761at 3251.678 kb on - strand, within Pf6N2E2_2761at 3251.680 kb on - strand, within Pf6N2E2_2761at 3251.680 kb on - strand, within Pf6N2E2_2761at 3251.680 kb on - strand, within Pf6N2E2_2761at 3251.740 kb on + strand, within Pf6N2E2_2761at 3251.763 kb on + strand, within Pf6N2E2_2761at 3251.763 kb on + strand, within Pf6N2E2_2761at 3251.764 kb on - strand, within Pf6N2E2_2761at 3251.772 kb on + strand, within Pf6N2E2_2761at 3251.772 kb on + strand, within Pf6N2E2_2761at 3251.784 kb on + strand, within Pf6N2E2_2761at 3252.766 kb on - strandat 3252.766 kb on - strandat 3252.766 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Magnesium chloride 0.125 M
remove
3,250,702 + Pf6N2E2_2758 0.81 +0.1
3,250,703 - Pf6N2E2_2758 0.82 -0.2
3,250,722 + Pf6N2E2_2758 0.83 -0.8
3,250,722 + Pf6N2E2_2758 0.83 -0.4
3,250,722 + Pf6N2E2_2758 0.83 -0.7
3,250,722 + Pf6N2E2_2758 0.83 -0.3
3,250,723 - Pf6N2E2_2758 0.83 -0.1
3,250,723 - +0.6
3,250,806 + Pf6N2E2_2758 0.88 +0.9
3,250,806 + Pf6N2E2_2758 0.88 -0.4
3,250,815 + Pf6N2E2_2758 0.89 +0.5
3,250,815 + Pf6N2E2_2758 0.89 +0.3
3,250,815 + Pf6N2E2_2758 0.89 -0.4
3,250,815 + Pf6N2E2_2758 0.89 +0.1
3,250,815 + Pf6N2E2_2758 0.89 -0.6
3,250,815 + Pf6N2E2_2758 0.89 -0.8
3,250,815 + Pf6N2E2_2758 0.89 -1.2
3,250,815 + Pf6N2E2_2758 0.89 +0.1
3,250,816 - Pf6N2E2_2758 0.89 -1.2
3,250,816 - Pf6N2E2_2758 0.89 -0.6
3,250,816 - Pf6N2E2_2758 0.89 -0.3
3,250,816 - Pf6N2E2_2758 0.89 +0.4
3,250,816 - Pf6N2E2_2758 0.89 +0.1
3,250,817 + Pf6N2E2_2758 0.89 -1.1
3,250,817 + Pf6N2E2_2758 0.89 +0.5
3,250,817 + Pf6N2E2_2758 0.89 -2.0
3,250,817 + Pf6N2E2_2758 0.89 +1.9
3,250,817 + Pf6N2E2_2758 0.89 +0.3
3,250,818 - Pf6N2E2_2758 0.89 -0.0
3,250,818 - Pf6N2E2_2758 0.89 +1.3
3,250,818 - Pf6N2E2_2758 0.89 +1.8
3,250,917 + +0.4
3,250,917 + -0.1
3,250,917 + +0.8
3,250,917 + +0.9
3,250,918 - +0.7
3,250,918 - -0.7
3,250,961 + +0.1
3,250,962 - -0.6
3,250,980 + +0.6
3,250,980 + -1.1
3,250,981 - +0.5
3,251,187 + Pf6N2E2_2759 0.50 -1.3
3,251,232 - Pf6N2E2_2759 0.60 -1.4
3,251,269 + Pf6N2E2_2759 0.68 +0.2
3,251,269 + Pf6N2E2_2759 0.68 -0.2
3,251,269 + Pf6N2E2_2759 0.68 +0.7
3,251,269 + Pf6N2E2_2759 0.68 -2.3
3,251,269 + Pf6N2E2_2759 0.68 +0.0
3,251,269 + Pf6N2E2_2759 0.68 -0.2
3,251,269 + Pf6N2E2_2759 0.68 +0.3
3,251,270 - Pf6N2E2_2759 0.68 +0.6
3,251,270 - Pf6N2E2_2759 0.68 +1.3
3,251,270 - Pf6N2E2_2759 0.68 -1.0
3,251,270 - Pf6N2E2_2759 0.68 +0.1
3,251,270 - Pf6N2E2_2759 0.68 +0.6
3,251,270 - Pf6N2E2_2759 0.68 +1.2
3,251,270 - Pf6N2E2_2759 0.68 -0.8
3,251,270 - Pf6N2E2_2759 0.68 -0.9
3,251,270 - Pf6N2E2_2759 0.68 +0.3
3,251,270 - Pf6N2E2_2759 0.68 +0.0
3,251,270 - Pf6N2E2_2759 0.68 -1.2
3,251,348 + Pf6N2E2_2759 0.86 +0.5
3,251,348 + Pf6N2E2_2759 0.86 -0.1
3,251,349 - Pf6N2E2_2759 0.86 -0.8
3,251,397 + +0.9
3,251,397 + -0.4
3,251,397 + -1.1
3,251,398 - -0.1
3,251,398 - -1.4
3,251,398 - -0.7
3,251,398 - -0.1
3,251,398 - -0.5
3,251,667 - Pf6N2E2_2761 0.18 -0.7
3,251,667 - Pf6N2E2_2761 0.18 -2.0
3,251,678 - Pf6N2E2_2761 0.24 -2.1
3,251,678 - Pf6N2E2_2761 0.24 -1.1
3,251,680 - Pf6N2E2_2761 0.25 -1.7
3,251,680 - Pf6N2E2_2761 0.25 -0.8
3,251,680 - Pf6N2E2_2761 0.25 -0.7
3,251,740 + Pf6N2E2_2761 0.54 -1.4
3,251,763 + Pf6N2E2_2761 0.65 -0.1
3,251,763 + Pf6N2E2_2761 0.65 -0.9
3,251,764 - Pf6N2E2_2761 0.65 +0.9
3,251,772 + Pf6N2E2_2761 0.69 +0.1
3,251,772 + Pf6N2E2_2761 0.69 +0.1
3,251,784 + Pf6N2E2_2761 0.75 +0.2
3,252,766 - +0.1
3,252,766 - -0.2
3,252,766 - -0.3

Or see this region's nucleotide sequence