Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04340 and RR42_RS04345 are separated by 208 nucleotides RR42_RS04345 and RR42_RS04350 are separated by 243 nucleotides
RR42_RS04340: RR42_RS04340 - hypothetical protein, at 964,094 to 964,774
_RS04340
RR42_RS04345: RR42_RS04345 - iron ABC transporter permease, at 964,983 to 966,611
_RS04345
RR42_RS04350: RR42_RS04350 - ABC transporter ATP-binding protein, at 966,855 to 967,916
_RS04350
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 964.075 kb on + strand at 964.096 kb on - strand at 964.275 kb on + strand, within RR42_RS04340 at 964.346 kb on + strand, within RR42_RS04340 at 964.346 kb on + strand, within RR42_RS04340 at 964.347 kb on - strand, within RR42_RS04340 at 964.401 kb on + strand, within RR42_RS04340 at 964.402 kb on - strand, within RR42_RS04340 at 964.402 kb on - strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.546 kb on + strand, within RR42_RS04340 at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on + strand at 964.774 kb on - strand at 964.922 kb on + strand at 964.923 kb on - strand at 964.985 kb on - strand at 965.113 kb on + strand at 965.114 kb on - strand at 965.114 kb on - strand at 965.366 kb on - strand, within RR42_RS04345 at 965.372 kb on - strand, within RR42_RS04345 at 965.512 kb on + strand, within RR42_RS04345 at 965.646 kb on - strand, within RR42_RS04345 at 965.761 kb on - strand, within RR42_RS04345 at 965.947 kb on + strand, within RR42_RS04345 at 965.980 kb on + strand, within RR42_RS04345 at 966.169 kb on + strand, within RR42_RS04345 at 966.169 kb on + strand, within RR42_RS04345 at 966.308 kb on + strand, within RR42_RS04345 at 966.311 kb on - strand, within RR42_RS04345 at 966.329 kb on - strand, within RR42_RS04345 at 966.329 kb on - strand, within RR42_RS04345 at 966.391 kb on + strand, within RR42_RS04345 at 966.391 kb on + strand, within RR42_RS04345 at 966.467 kb on + strand at 966.467 kb on + strand at 966.467 kb on + strand at 966.468 kb on - strand at 966.478 kb on + strand at 966.479 kb on - strand at 966.657 kb on + strand at 966.657 kb on + strand at 966.658 kb on - strand at 966.658 kb on - strand at 966.713 kb on - strand at 966.751 kb on - strand at 966.762 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.813 kb on - strand at 966.813 kb on - strand at 966.814 kb on + strand at 966.814 kb on + strand at 966.814 kb on + strand at 966.815 kb on - strand at 966.815 kb on - strand at 967.132 kb on - strand, within RR42_RS04350 at 967.132 kb on - strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.539 kb on + strand, within RR42_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 964,075 + -0.2 964,096 - +0.9 964,275 + RR42_RS04340 0.27 -2.8 964,346 + RR42_RS04340 0.37 +0.0 964,346 + RR42_RS04340 0.37 +0.6 964,347 - RR42_RS04340 0.37 -2.4 964,401 + RR42_RS04340 0.45 +0.5 964,402 - RR42_RS04340 0.45 +0.5 964,402 - RR42_RS04340 0.45 +0.8 964,546 + RR42_RS04340 0.66 -0.6 964,546 + RR42_RS04340 0.66 -0.5 964,546 + RR42_RS04340 0.66 -0.4 964,546 + RR42_RS04340 0.66 +1.1 964,546 + RR42_RS04340 0.66 +0.0 964,546 + RR42_RS04340 0.66 -2.7 964,774 + +0.1 964,774 + -0.5 964,774 + +0.8 964,774 + +0.1 964,774 + +0.4 964,774 - -0.6 964,922 + -0.9 964,923 - +0.4 964,985 - -0.2 965,113 + +0.2 965,114 - -0.3 965,114 - -1.2 965,366 - RR42_RS04345 0.24 +0.4 965,372 - RR42_RS04345 0.24 -2.2 965,512 + RR42_RS04345 0.32 -1.8 965,646 - RR42_RS04345 0.41 -1.5 965,761 - RR42_RS04345 0.48 -2.4 965,947 + RR42_RS04345 0.59 -0.9 965,980 + RR42_RS04345 0.61 -1.7 966,169 + RR42_RS04345 0.73 -0.3 966,169 + RR42_RS04345 0.73 -1.4 966,308 + RR42_RS04345 0.81 -0.0 966,311 - RR42_RS04345 0.82 -0.7 966,329 - RR42_RS04345 0.83 +0.0 966,329 - RR42_RS04345 0.83 +0.3 966,391 + RR42_RS04345 0.86 -0.0 966,391 + RR42_RS04345 0.86 -0.3 966,467 + -1.1 966,467 + -2.1 966,467 + -1.2 966,468 - -1.1 966,478 + +0.8 966,479 - +0.2 966,657 + -0.4 966,657 + -0.6 966,658 - +2.7 966,658 - +0.4 966,713 - -2.6 966,751 - +0.1 966,762 + +0.7 966,812 + -0.4 966,812 + +0.5 966,812 + +0.9 966,812 + +1.9 966,812 + -1.1 966,813 - -0.0 966,813 - +1.3 966,814 + +0.2 966,814 + +0.1 966,814 + +0.4 966,815 - -3.0 966,815 - -0.3 967,132 - RR42_RS04350 0.26 -0.3 967,132 - RR42_RS04350 0.26 -0.8 967,532 + RR42_RS04350 0.64 -0.9 967,532 + RR42_RS04350 0.64 -1.0 967,539 + RR42_RS04350 0.64 -1.3
Or see this region's nucleotide sequence