Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0793 and Psyr_0794 are separated by 126 nucleotides Psyr_0794 and Psyr_0795 overlap by 4 nucleotides Psyr_0795 and Psyr_0796 overlap by 4 nucleotides Psyr_0796 and Psyr_0797 are separated by 1 nucleotides
Psyr_0793: Psyr_0793 - conserved hypothetical protein, at 899,965 to 900,462
_0793
Psyr_0794: Psyr_0794 - Protein of unknown function DUF329, at 900,589 to 900,798
_0794
Psyr_0795: Psyr_0795 - dephospho-CoA kinase, at 900,795 to 901,418
_0795
Psyr_0796: Psyr_0796 - type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A, at 901,415 to 902,287
_0796
Psyr_0797: Psyr_0797 - type II secretion system protein, at 902,289 to 903,506
_0797
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 900.456 kb on + strand at 900.456 kb on + strand at 900.456 kb on + strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.457 kb on - strand at 900.469 kb on + strand at 900.469 kb on + strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.470 kb on - strand at 900.550 kb on + strand at 900.550 kb on + strand at 900.550 kb on + strand at 900.550 kb on + strand at 900.551 kb on - strand at 900.551 kb on - strand at 900.551 kb on - strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.558 kb on + strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.559 kb on - strand at 900.561 kb on - strand at 900.561 kb on - strand at 900.561 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.818 kb on + strand at 900.818 kb on + strand at 900.818 kb on + strand at 900.819 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.441 kb on - strand at 901.452 kb on - strand at 901.452 kb on - strand at 901.497 kb on + strand at 901.823 kb on + strand, within Psyr_0796 at 901.823 kb on + strand, within Psyr_0796 at 901.824 kb on - strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.926 kb on + strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 901.927 kb on - strand, within Psyr_0796 at 902.002 kb on + strand, within Psyr_0796 at 902.003 kb on - strand, within Psyr_0796 at 902.003 kb on - strand, within Psyr_0796 at 902.003 kb on - strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.019 kb on + strand, within Psyr_0796 at 902.020 kb on - strand, within Psyr_0796 at 902.020 kb on - strand, within Psyr_0796 at 902.315 kb on + strand at 902.315 kb on + strand at 902.315 kb on + strand at 902.316 kb on - strand at 902.316 kb on - strand at 902.316 kb on - strand at 902.316 kb on - strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.319 kb on + strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.320 kb on - strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.323 kb on + strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.324 kb on - strand at 902.349 kb on + strand at 902.349 kb on + strand at 902.350 kb on - strand at 902.350 kb on - strand at 902.428 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.431 kb on + strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.432 kb on - strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.435 kb on + strand, within Psyr_0797 at 902.436 kb on - strand, within Psyr_0797 at 902.436 kb on - strand, within Psyr_0797 at 902.436 kb on - strand, within Psyr_0797 at 902.439 kb on + strand, within Psyr_0797 at 902.439 kb on + strand, within Psyr_0797 at 902.439 kb on + strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.440 kb on - strand, within Psyr_0797 at 902.572 kb on - strand, within Psyr_0797 at 902.592 kb on - strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.595 kb on + strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.596 kb on - strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.598 kb on + strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.599 kb on - strand, within Psyr_0797 at 902.780 kb on - strand, within Psyr_0797 at 902.790 kb on - strand, within Psyr_0797 at 902.876 kb on + strand, within Psyr_0797 at 902.990 kb on - strand, within Psyr_0797 at 903.018 kb on + strand, within Psyr_0797 at 903.038 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.040 kb on + strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.041 kb on - strand, within Psyr_0797 at 903.096 kb on + strand, within Psyr_0797 at 903.096 kb on + strand, within Psyr_0797 at 903.097 kb on - strand, within Psyr_0797 at 903.099 kb on + strand, within Psyr_0797 at 903.099 kb on + strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.100 kb on - strand, within Psyr_0797 at 903.158 kb on + strand, within Psyr_0797 at 903.158 kb on + strand, within Psyr_0797 at 903.210 kb on - strand, within Psyr_0797
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 900,456 + -3.4 900,456 + +1.0 900,456 + -3.3 900,457 - -0.4 900,457 - -0.4 900,457 - +0.9 900,457 - -0.4 900,457 - -0.1 900,457 - -0.8 900,457 - +0.9 900,457 - +1.6 900,457 - -0.1 900,457 - -0.3 900,469 + -0.7 900,469 + -1.6 900,470 - -1.7 900,470 - +2.4 900,470 - -2.1 900,470 - +0.6 900,470 - -0.4 900,550 + -1.9 900,550 + +1.4 900,550 + -1.1 900,550 + +0.9 900,551 - +0.7 900,551 - -0.6 900,551 - -0.1 900,558 + +0.1 900,558 + +0.6 900,558 + +0.5 900,558 + +0.6 900,558 + +0.4 900,558 + -1.4 900,558 + +1.1 900,558 + -1.4 900,559 - -0.8 900,559 - -3.2 900,559 - -1.0 900,559 - +0.9 900,559 - +0.6 900,559 - +0.3 900,559 - -2.6 900,561 - -3.0 900,561 - -1.6 900,561 - +2.0 900,588 - -2.7 900,588 - -1.9 900,818 + +1.3 900,818 + +0.4 900,818 + +3.0 900,819 - +1.2 901,441 - +0.3 901,441 - +0.5 901,441 - -1.8 901,441 - +0.5 901,441 - -0.6 901,441 - +1.2 901,441 - -0.9 901,441 - -1.1 901,441 - -1.8 901,452 - +1.0 901,452 - -1.3 901,497 + -0.4 901,823 + Psyr_0796 0.47 -3.2 901,823 + Psyr_0796 0.47 -2.2 901,824 - Psyr_0796 0.47 -1.9 901,926 + Psyr_0796 0.59 +0.2 901,926 + Psyr_0796 0.59 -0.1 901,926 + Psyr_0796 0.59 -1.3 901,926 + Psyr_0796 0.59 +0.2 901,926 + Psyr_0796 0.59 -0.4 901,927 - Psyr_0796 0.59 -0.1 901,927 - Psyr_0796 0.59 +1.5 901,927 - Psyr_0796 0.59 -1.3 901,927 - Psyr_0796 0.59 -3.7 902,002 + Psyr_0796 0.67 +0.6 902,003 - Psyr_0796 0.67 -0.9 902,003 - Psyr_0796 0.67 -2.6 902,003 - Psyr_0796 0.67 -2.2 902,019 + Psyr_0796 0.69 -3.6 902,019 + Psyr_0796 0.69 -2.8 902,019 + Psyr_0796 0.69 +0.4 902,019 + Psyr_0796 0.69 -2.1 902,020 - Psyr_0796 0.69 -2.0 902,020 - Psyr_0796 0.69 -2.8 902,315 + +0.5 902,315 + -1.2 902,315 + -1.8 902,316 - +1.9 902,316 - +1.2 902,316 - +1.4 902,316 - -2.7 902,319 + -1.4 902,319 + +0.6 902,319 + -0.4 902,319 + +3.2 902,319 + +0.4 902,319 + -1.0 902,319 + +2.5 902,320 - -1.3 902,320 - +0.6 902,320 - +0.8 902,320 - -0.1 902,320 - +0.9 902,320 - +1.6 902,323 + -2.2 902,323 + -0.2 902,323 + +1.4 902,323 + -0.7 902,323 + -0.2 902,323 + -1.5 902,323 + -0.7 902,323 + +0.3 902,323 + -0.4 902,323 + -2.1 902,323 + -0.7 902,323 + -0.8 902,323 + -1.3 902,323 + -2.0 902,323 + -0.5 902,324 - +0.2 902,324 - +0.4 902,324 - -0.4 902,324 - -0.6 902,324 - -2.1 902,324 - -2.5 902,324 - +2.1 902,324 - +0.2 902,324 - -0.2 902,324 - -0.4 902,324 - -1.7 902,324 - -0.8 902,324 - -1.6 902,324 - -1.6 902,324 - -0.0 902,324 - +2.0 902,324 - +0.6 902,324 - +0.1 902,349 + -0.8 902,349 + -1.6 902,350 - -0.9 902,350 - -1.8 902,428 + Psyr_0797 0.11 +1.2 902,431 + Psyr_0797 0.12 -1.3 902,431 + Psyr_0797 0.12 +0.5 902,431 + Psyr_0797 0.12 -0.5 902,431 + Psyr_0797 0.12 -2.1 902,431 + Psyr_0797 0.12 +0.4 902,431 + Psyr_0797 0.12 -0.9 902,431 + Psyr_0797 0.12 -1.0 902,431 + Psyr_0797 0.12 +1.3 902,432 - Psyr_0797 0.12 +1.8 902,432 - Psyr_0797 0.12 -1.0 902,432 - Psyr_0797 0.12 +3.1 902,432 - Psyr_0797 0.12 +0.6 902,432 - Psyr_0797 0.12 -1.4 902,432 - Psyr_0797 0.12 -0.5 902,432 - Psyr_0797 0.12 +1.7 902,435 + Psyr_0797 0.12 -1.4 902,435 + Psyr_0797 0.12 +0.8 902,435 + Psyr_0797 0.12 +0.2 902,435 + Psyr_0797 0.12 -2.3 902,435 + Psyr_0797 0.12 -1.1 902,435 + Psyr_0797 0.12 -0.1 902,435 + Psyr_0797 0.12 +1.9 902,436 - Psyr_0797 0.12 -0.6 902,436 - Psyr_0797 0.12 +2.0 902,436 - Psyr_0797 0.12 +0.5 902,439 + Psyr_0797 0.12 +1.7 902,439 + Psyr_0797 0.12 +1.8 902,439 + Psyr_0797 0.12 +0.1 902,440 - Psyr_0797 0.12 +0.4 902,440 - Psyr_0797 0.12 +0.7 902,440 - Psyr_0797 0.12 -0.6 902,440 - Psyr_0797 0.12 -0.0 902,440 - Psyr_0797 0.12 -2.1 902,572 - Psyr_0797 0.23 -2.1 902,592 - Psyr_0797 0.25 +0.2 902,595 + Psyr_0797 0.25 +1.8 902,595 + Psyr_0797 0.25 -0.2 902,595 + Psyr_0797 0.25 -1.8 902,595 + Psyr_0797 0.25 -3.0 902,596 - Psyr_0797 0.25 -0.0 902,596 - Psyr_0797 0.25 +0.2 902,596 - Psyr_0797 0.25 -2.5 902,598 + Psyr_0797 0.25 -0.7 902,598 + Psyr_0797 0.25 -1.0 902,598 + Psyr_0797 0.25 -0.4 902,598 + Psyr_0797 0.25 -0.1 902,598 + Psyr_0797 0.25 -0.5 902,598 + Psyr_0797 0.25 -0.8 902,598 + Psyr_0797 0.25 +2.7 902,598 + Psyr_0797 0.25 +0.9 902,599 - Psyr_0797 0.25 -0.8 902,599 - Psyr_0797 0.25 -1.0 902,599 - Psyr_0797 0.25 +0.2 902,780 - Psyr_0797 0.40 -0.3 902,790 - Psyr_0797 0.41 +1.3 902,876 + Psyr_0797 0.48 -0.3 902,990 - Psyr_0797 0.58 -0.6 903,018 + Psyr_0797 0.60 +1.0 903,038 + Psyr_0797 0.61 -0.5 903,040 + Psyr_0797 0.62 -0.6 903,040 + Psyr_0797 0.62 -1.4 903,040 + Psyr_0797 0.62 -2.0 903,041 - Psyr_0797 0.62 -0.4 903,041 - Psyr_0797 0.62 -1.3 903,041 - Psyr_0797 0.62 +0.4 903,041 - Psyr_0797 0.62 -1.3 903,041 - Psyr_0797 0.62 -0.7 903,096 + Psyr_0797 0.66 -3.0 903,096 + Psyr_0797 0.66 -0.2 903,097 - Psyr_0797 0.66 +0.1 903,099 + Psyr_0797 0.67 -1.7 903,099 + Psyr_0797 0.67 -0.5 903,100 - Psyr_0797 0.67 +0.7 903,100 - Psyr_0797 0.67 -1.3 903,100 - Psyr_0797 0.67 -1.8 903,100 - Psyr_0797 0.67 -0.4 903,100 - Psyr_0797 0.67 -0.6 903,100 - Psyr_0797 0.67 +0.4 903,100 - Psyr_0797 0.67 -0.3 903,158 + Psyr_0797 0.71 +1.0 903,158 + Psyr_0797 0.71 +1.7 903,210 - Psyr_0797 0.76 -1.8
Or see this region's nucleotide sequence