Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0721

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
823,900	+		Psyr_0719	0.86	+0.6
823,900	+		Psyr_0719	0.86	-0.9
823,900	+		Psyr_0719	0.86	-0.9
823,900	+		Psyr_0719	0.86	-2.0
823,900	+		Psyr_0719	0.86	+1.5
823,900	+		Psyr_0719	0.86	-1.0
823,901	-		Psyr_0719	0.86	-0.4
823,901	-		Psyr_0719	0.86	-0.9
823,901	-		Psyr_0719	0.86	+0.2
823,901	-		Psyr_0719	0.86	+0.0
823,901	-		Psyr_0719	0.86	-1.5
823,901	-		Psyr_0719	0.86	+0.6
823,901	-		Psyr_0719	0.86	-0.8
823,901	-		Psyr_0719	0.86	+2.2
823,951	+		Psyr_0719	0.87	-2.6
823,951	+		Psyr_0719	0.87	-0.8
823,952	-		Psyr_0719	0.87	-1.8
823,952	-		Psyr_0719	0.87	-1.4
823,952	-		Psyr_0719	0.87	-2.0
823,978	+		Psyr_0719	0.88	-0.4
824,000	-		Psyr_0719	0.89	+0.2
824,000	-		Psyr_0719	0.89	-0.7
824,000	-		Psyr_0719	0.89	-0.8
824,090	+				-1.8
824,091	-				+0.7
824,091	-				-0.1
824,124	+				-1.5
824,124	+				-0.6
824,124	+				-0.9
824,124	+				-2.0
824,124	+				+0.6
824,124	+				-0.4
824,125	-				-0.1
824,125	-				+1.9
824,125	-				+0.9
824,125	-				-2.5
824,125	-				+0.8
824,125	-				+0.6
824,125	-				-0.8
824,128	+				+0.5
824,129	-				-1.8
824,129	-				-0.9
824,129	-				-0.4
824,129	-				-3.2
824,160	+				-0.1
824,160	+				-1.0
824,269	-				+1.5
824,326	+				-0.5
824,326	+				-0.0
824,365	+				+0.5
824,365	+				-0.3
824,365	+				-0.7
824,365	+				-3.1
824,366	-				-1.1
824,366	-				-3.2
824,366	-				-0.1
824,393	+				-0.1
824,393	+				-2.0
824,393	+				-1.8
824,393	+				-3.5
824,394	-				+0.2
824,394	-				+0.0
824,394	-				+0.2
824,394	-				-0.3
824,394	-				-0.8
824,460	+		Psyr_0720	0.22	+1.3
824,460	+		Psyr_0720	0.22	+1.8
824,461	-		Psyr_0720	0.23	-0.3
824,461	-		Psyr_0720	0.23	-0.1
824,461	-		Psyr_0720	0.23	-0.0
824,461	-		Psyr_0720	0.23	-3.2
824,469	+		Psyr_0720	0.25	-1.7
824,469	+		Psyr_0720	0.25	+1.4
824,470	-		Psyr_0720	0.25	-1.5
824,501	+		Psyr_0720	0.33	+0.8
824,560	-		Psyr_0720	0.47	-1.8
824,568	+		Psyr_0720	0.49	+1.3
824,569	-		Psyr_0720	0.50	+2.1
824,569	-		Psyr_0720	0.50	-2.0
824,578	+		Psyr_0720	0.52	-1.1
824,578	+		Psyr_0720	0.52	-0.4
824,578	+		Psyr_0720	0.52	-2.3
824,579	-		Psyr_0720	0.52	-3.0
824,588	+		Psyr_0720	0.54	+1.2
824,588	+		Psyr_0720	0.54	+0.4
824,591	+		Psyr_0720	0.55	+0.1
824,591	+		Psyr_0720	0.55	+1.8
824,591	+		Psyr_0720	0.55	+0.9
824,591	+		Psyr_0720	0.55	+0.2
824,591	+		Psyr_0720	0.55	-1.3
824,591	+		Psyr_0720	0.55	+0.0
824,591	+		Psyr_0720	0.55	+1.1
824,591	+		Psyr_0720	0.55	+0.2
824,591	+		Psyr_0720	0.55	-2.5
824,591	+		Psyr_0720	0.55	+0.5
824,591	+		Psyr_0720	0.55	+1.3
824,592	-		Psyr_0720	0.55	+0.8
824,592	-		Psyr_0720	0.55	+0.2
824,592	-		Psyr_0720	0.55	+0.5
824,592	-		Psyr_0720	0.55	+1.1
824,592	-		Psyr_0720	0.55	-1.0
824,592	-		Psyr_0720	0.55	+0.0
824,592	-		Psyr_0720	0.55	+0.0
824,592	-		Psyr_0720	0.55	+0.6
824,592	-		Psyr_0720	0.55	+0.6
824,592	-		Psyr_0720	0.55	-0.4
824,592	-		Psyr_0720	0.55	+0.4
824,592	-		Psyr_0720	0.55	+1.2
824,592	-		Psyr_0720	0.55	-1.6
824,592	-		Psyr_0720	0.55	-2.2
824,595	+		Psyr_0720	0.56	-0.5
824,595	+		Psyr_0720	0.56	-1.4
824,595	+		Psyr_0720	0.56	+1.4
824,595	+		Psyr_0720	0.56	+0.0
824,595	+		Psyr_0720	0.56	+0.3
824,595	+		Psyr_0720	0.56	+0.3
824,595	+		Psyr_0720	0.56	+2.1
824,595	+		Psyr_0720	0.56	+0.8
824,596	-		Psyr_0720	0.56	+2.0
824,596	-		Psyr_0720	0.56	-1.3
824,596	-		Psyr_0720	0.56	-1.0
824,596	-		Psyr_0720	0.56	-0.8
824,598	+		Psyr_0720	0.57	-1.6
824,598	+		Psyr_0720	0.57	-0.0
824,599	-		Psyr_0720	0.57	+0.6
824,599	-		Psyr_0720	0.57	-1.6
824,599	-		Psyr_0720	0.57	-1.0
824,599	-		Psyr_0720	0.57	-1.1
824,599	-		Psyr_0720	0.57	-2.8
824,599	-		Psyr_0720	0.57	+2.2
824,605	+		Psyr_0720	0.58	+1.6
824,606	-		Psyr_0720	0.59	-0.1
824,699	+		Psyr_0720	0.82	+0.4
824,699	+		Psyr_0720	0.82	-0.7
824,699	+		Psyr_0720	0.82	-0.5
824,700	-		Psyr_0720	0.82	+0.2
824,702	+		Psyr_0720	0.83	-0.8
824,703	-		Psyr_0720	0.83	-0.2
824,813	+				+0.5
824,814	-				+1.2
824,837	+				+0.2
824,837	+				+0.8
824,837	+				-0.2
824,837	+				+0.4
824,837	+				+0.7
824,837	+				+1.1
824,837	+				-0.2
824,838	-				+1.3
824,838	-				+0.3
824,838	-				-2.0
824,838	-				-1.2
824,838	-				-0.2
824,954	-		Psyr_0721	0.14	-0.2
825,157	-		Psyr_0721	0.33	-0.2
825,200	-		Psyr_0721	0.37	+0.7
825,214	+		Psyr_0721	0.38	+1.2
825,214	+		Psyr_0721	0.38	+1.6
825,214	+		Psyr_0721	0.38	+1.2
825,214	+		Psyr_0721	0.38	+0.9
825,214	+		Psyr_0721	0.38	+1.8
825,214	+		Psyr_0721	0.38	-0.2
825,214	+		Psyr_0721	0.38	-2.1
825,215	-		Psyr_0721	0.38	-1.6
825,215	-		Psyr_0721	0.38	+0.4
825,215	-		Psyr_0721	0.38	+0.2
825,215	-		Psyr_0721	0.38	-1.1
825,215	-		Psyr_0721	0.38	-2.7
825,215	-		Psyr_0721	0.38	-0.8
825,236	+		Psyr_0721	0.40	-0.6
825,236	+		Psyr_0721	0.40	-0.7
825,236	+		Psyr_0721	0.40	-0.3
825,236	+		Psyr_0721	0.40	-0.6
825,237	-		Psyr_0721	0.40	-0.0
825,237	-		Psyr_0721	0.40	+0.5
825,237	-		Psyr_0721	0.40	-1.6
825,237	-		Psyr_0721	0.40	+0.6
825,484	+		Psyr_0721	0.62	-0.0
825,484	+		Psyr_0721	0.62	-1.7
825,485	-		Psyr_0721	0.62	-2.2
825,898	+				-0.2
825,898	+				-2.0
825,898	+				-0.1
825,898	+				+0.8
825,899	-				+1.3
825,938	+				+0.8
825,939	-				+1.6
825,939	-				+3.2
825,991	+				+0.2
825,991	+				-2.4
825,991	+				+0.4
825,991	+				-2.1
825,991	+				+1.1
825,991	+				+0.4
825,991	+				+1.1
825,991	+				+0.8
825,991	+				+0.4
825,991	+				-1.1
825,991	+				+0.2
825,991	+				+0.5
825,991	+				+0.4
825,991	+				+1.7
825,991	+				+0.0
825,991	+				-1.7
825,991	+				+1.2
825,991	+				+0.0
825,991	+				+0.0
825,991	+				+0.5
825,991	+				+0.5
825,991	+				+0.2
825,991	+				+0.3
825,992	-				+1.2
825,992	-				-1.8
825,992	-				+0.5
825,992	-				-0.8
825,992	-				+1.2
825,992	-				+4.0
825,992	-				+0.1
825,992	-				-1.1
825,992	-				-4.0
825,992	-				-0.4
825,992	-				-0.7
825,992	-				-2.6
825,992	-				+0.4
825,992	-				-0.8
825,992	-				+0.4
825,992	-				-1.1
825,992	-				+1.1
825,992	-				-0.3
825,992	-				+0.5
825,992	-				-1.4
825,992	-				+3.0
826,005	+				-0.2
826,149	+		Psyr_0722	0.10	+0.7
826,149	+		Psyr_0722	0.10	-1.6
826,149	+		Psyr_0722	0.10	+0.6
826,264	-		Psyr_0722	0.19	+0.8
826,315	-		Psyr_0722	0.23	-3.5
826,473	+		Psyr_0722	0.34	-1.4
826,474	-		Psyr_0722	0.34	-0.9
826,474	-		Psyr_0722	0.34	+0.2
826,474	-		Psyr_0722	0.34	+0.4
826,474	-		Psyr_0722	0.34	-0.5
826,474	-		Psyr_0722	0.34	-0.2
826,474	-		Psyr_0722	0.34	-0.6
826,835	+		Psyr_0722	0.61	-1.5
826,872	+		Psyr_0722	0.64	+1.5
826,872	+		Psyr_0722	0.64	-2.2
826,872	+		Psyr_0722	0.64	+0.3
826,872	+		Psyr_0722	0.64	-0.2
826,873	-		Psyr_0722	0.64	+0.7
826,873	-		Psyr_0722	0.64	-0.4
826,873	-		Psyr_0722	0.64	-3.6
826,873	-		Psyr_0722	0.64	+3.0