Experiment: Minimal media pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04545 and AO356_04550 are separated by 32 nucleotides AO356_04550 and AO356_04555 are separated by 98 nucleotides
AO356_04545: AO356_04545 - permease, at 1,024,901 to 1,025,971
_04545
AO356_04550: AO356_04550 - response regulator SirA, at 1,026,004 to 1,026,243
_04550
AO356_04555: AO356_04555 - peptidase M48, at 1,026,342 to 1,027,775
_04555
Position (kb)
1026
1027 Strain fitness (log2 ratio)
-2
-1
0
1 at 1025.134 kb on - strand, within AO356_04545 at 1025.134 kb on - strand, within AO356_04545 at 1025.211 kb on + strand, within AO356_04545 at 1025.211 kb on + strand, within AO356_04545 at 1025.212 kb on - strand, within AO356_04545 at 1025.259 kb on + strand, within AO356_04545 at 1025.260 kb on - strand, within AO356_04545 at 1025.260 kb on - strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.337 kb on + strand, within AO356_04545 at 1025.337 kb on + strand, within AO356_04545 at 1025.338 kb on - strand, within AO356_04545 at 1025.403 kb on + strand, within AO356_04545 at 1025.403 kb on + strand, within AO356_04545 at 1025.478 kb on + strand, within AO356_04545 at 1025.478 kb on + strand, within AO356_04545 at 1025.478 kb on + strand, within AO356_04545 at 1025.479 kb on - strand, within AO356_04545 at 1025.479 kb on - strand, within AO356_04545 at 1025.621 kb on + strand, within AO356_04545 at 1025.622 kb on - strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.631 kb on - strand, within AO356_04545 at 1025.631 kb on - strand, within AO356_04545 at 1025.631 kb on - strand, within AO356_04545 at 1025.712 kb on - strand, within AO356_04545 at 1025.720 kb on - strand, within AO356_04545 at 1025.720 kb on - strand, within AO356_04545 at 1025.720 kb on - strand, within AO356_04545 at 1025.823 kb on + strand, within AO356_04545 at 1025.824 kb on - strand, within AO356_04545 at 1025.824 kb on - strand, within AO356_04545 at 1025.824 kb on - strand, within AO356_04545 at 1025.824 kb on - strand, within AO356_04545 at 1025.872 kb on + strand at 1025.873 kb on - strand at 1025.937 kb on + strand at 1025.938 kb on - strand at 1025.938 kb on - strand at 1025.938 kb on - strand at 1025.973 kb on - strand at 1025.993 kb on - strand at 1026.024 kb on - strand at 1026.029 kb on + strand, within AO356_04550 at 1026.030 kb on - strand, within AO356_04550 at 1026.063 kb on + strand, within AO356_04550 at 1026.063 kb on + strand, within AO356_04550 at 1026.064 kb on - strand, within AO356_04550 at 1026.230 kb on - strand at 1026.281 kb on + strand at 1026.281 kb on + strand at 1026.281 kb on + strand at 1026.281 kb on + strand at 1026.281 kb on + strand at 1026.281 kb on + strand at 1026.281 kb on + strand at 1026.282 kb on - strand at 1026.282 kb on - strand at 1026.282 kb on - strand at 1026.282 kb on - strand at 1026.313 kb on + strand at 1026.313 kb on + strand at 1026.313 kb on + strand at 1026.314 kb on - strand at 1026.314 kb on - strand at 1026.314 kb on - strand at 1026.330 kb on - strand at 1026.330 kb on - strand at 1026.537 kb on + strand, within AO356_04555 at 1026.537 kb on + strand, within AO356_04555 at 1026.537 kb on + strand, within AO356_04555 at 1026.538 kb on - strand, within AO356_04555 at 1026.555 kb on + strand, within AO356_04555 at 1026.556 kb on - strand, within AO356_04555 at 1026.702 kb on + strand, within AO356_04555 at 1027.137 kb on + strand, within AO356_04555 at 1027.171 kb on - strand, within AO356_04555 at 1027.171 kb on - strand, within AO356_04555 at 1027.171 kb on - strand, within AO356_04555
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH6 remove 1,025,134 - AO356_04545 0.22 +0.0 1,025,134 - AO356_04545 0.22 -1.1 1,025,211 + AO356_04545 0.29 +0.3 1,025,211 + AO356_04545 0.29 -0.7 1,025,212 - AO356_04545 0.29 -0.5 1,025,259 + AO356_04545 0.33 -0.3 1,025,260 - AO356_04545 0.34 +0.3 1,025,260 - AO356_04545 0.34 +0.3 1,025,289 + AO356_04545 0.36 -0.7 1,025,289 + AO356_04545 0.36 +0.1 1,025,289 + AO356_04545 0.36 +0.8 1,025,289 + AO356_04545 0.36 -1.8 1,025,289 + AO356_04545 0.36 -0.3 1,025,289 + AO356_04545 0.36 +0.4 1,025,289 + AO356_04545 0.36 +0.0 1,025,290 - AO356_04545 0.36 +0.4 1,025,290 - AO356_04545 0.36 +0.5 1,025,290 - AO356_04545 0.36 -0.4 1,025,290 - AO356_04545 0.36 +1.1 1,025,290 - AO356_04545 0.36 -0.0 1,025,337 + AO356_04545 0.41 +0.0 1,025,337 + AO356_04545 0.41 -0.6 1,025,338 - AO356_04545 0.41 +1.0 1,025,403 + AO356_04545 0.47 -0.6 1,025,403 + AO356_04545 0.47 -0.0 1,025,478 + AO356_04545 0.54 +1.1 1,025,478 + AO356_04545 0.54 -0.7 1,025,478 + AO356_04545 0.54 +0.2 1,025,479 - AO356_04545 0.54 +0.2 1,025,479 - AO356_04545 0.54 -0.6 1,025,621 + AO356_04545 0.67 -0.4 1,025,622 - AO356_04545 0.67 +0.8 1,025,630 + AO356_04545 0.68 -0.4 1,025,630 + AO356_04545 0.68 +0.1 1,025,630 + AO356_04545 0.68 +1.5 1,025,630 + AO356_04545 0.68 +0.5 1,025,631 - AO356_04545 0.68 -0.7 1,025,631 - AO356_04545 0.68 +0.3 1,025,631 - AO356_04545 0.68 +0.1 1,025,712 - AO356_04545 0.76 -1.3 1,025,720 - AO356_04545 0.76 +0.7 1,025,720 - AO356_04545 0.76 -0.2 1,025,720 - AO356_04545 0.76 -0.2 1,025,823 + AO356_04545 0.86 +0.3 1,025,824 - AO356_04545 0.86 +0.6 1,025,824 - AO356_04545 0.86 -0.5 1,025,824 - AO356_04545 0.86 +1.4 1,025,824 - AO356_04545 0.86 +0.3 1,025,872 + +1.0 1,025,873 - +0.1 1,025,937 + +0.6 1,025,938 - +0.0 1,025,938 - +0.8 1,025,938 - +0.9 1,025,973 - +0.5 1,025,993 - +0.4 1,026,024 - -1.3 1,026,029 + AO356_04550 0.10 -1.5 1,026,030 - AO356_04550 0.11 -0.9 1,026,063 + AO356_04550 0.25 -1.3 1,026,063 + AO356_04550 0.25 -1.0 1,026,064 - AO356_04550 0.25 -0.8 1,026,230 - -2.7 1,026,281 + +0.5 1,026,281 + +0.5 1,026,281 + +0.7 1,026,281 + +0.8 1,026,281 + +0.4 1,026,281 + -0.9 1,026,281 + +1.3 1,026,282 - +0.1 1,026,282 - +0.1 1,026,282 - -0.5 1,026,282 - +0.6 1,026,313 + +0.1 1,026,313 + +0.5 1,026,313 + -0.3 1,026,314 - -0.0 1,026,314 - -0.7 1,026,314 - -0.7 1,026,330 - +0.1 1,026,330 - -0.7 1,026,537 + AO356_04555 0.14 +0.4 1,026,537 + AO356_04555 0.14 -0.5 1,026,537 + AO356_04555 0.14 +0.2 1,026,538 - AO356_04555 0.14 -0.2 1,026,555 + AO356_04555 0.15 +0.8 1,026,556 - AO356_04555 0.15 +0.7 1,026,702 + AO356_04555 0.25 -0.2 1,027,137 + AO356_04555 0.55 -0.7 1,027,171 - AO356_04555 0.58 -0.6 1,027,171 - AO356_04555 0.58 -0.3 1,027,171 - AO356_04555 0.58 -1.3
Or see this region's nucleotide sequence