Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0872 and Psyr_0873 overlap by 4 nucleotides Psyr_0873 and Psyr_0874 are separated by 201 nucleotides Psyr_0874 and Psyr_0875 are separated by 2 nucleotides
Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843
_0872
Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403
_0873
Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012
_0874
Psyr_0875: Psyr_0875 - outer membrane transport energization protein TonB, at 997,015 to 997,779
_0875
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 994.975 kb on + strand, within Psyr_0872 at 994.975 kb on + strand, within Psyr_0872 at 994.976 kb on - strand, within Psyr_0872 at 994.979 kb on + strand, within Psyr_0872 at 995.032 kb on + strand, within Psyr_0872 at 995.198 kb on - strand, within Psyr_0872 at 995.283 kb on + strand, within Psyr_0872 at 995.284 kb on - strand, within Psyr_0872 at 995.284 kb on - strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.296 kb on + strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.297 kb on - strand, within Psyr_0872 at 995.302 kb on + strand, within Psyr_0872 at 995.302 kb on + strand, within Psyr_0872 at 995.302 kb on + strand, within Psyr_0872 at 995.302 kb on + strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.303 kb on - strand, within Psyr_0872 at 995.366 kb on - strand, within Psyr_0872 at 995.491 kb on + strand, within Psyr_0872 at 995.517 kb on + strand, within Psyr_0872 at 995.517 kb on + strand, within Psyr_0872 at 995.578 kb on - strand, within Psyr_0872 at 995.578 kb on - strand, within Psyr_0872 at 995.784 kb on + strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.785 kb on - strand at 995.808 kb on - strand at 995.865 kb on + strand at 995.936 kb on - strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.946 kb on + strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 995.947 kb on - strand, within Psyr_0873 at 996.075 kb on + strand, within Psyr_0873 at 996.076 kb on - strand, within Psyr_0873 at 996.407 kb on + strand at 996.408 kb on - strand at 996.481 kb on + strand at 996.481 kb on + strand at 996.481 kb on + strand at 996.482 kb on - strand at 996.482 kb on - strand at 996.482 kb on - strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.497 kb on + strand at 996.498 kb on - strand at 996.503 kb on + strand at 996.504 kb on - strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.514 kb on + strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.515 kb on - strand at 996.525 kb on + strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.536 kb on + strand at 996.536 kb on + strand at 996.536 kb on + strand at 996.537 kb on - strand at 996.537 kb on - strand at 996.567 kb on + strand at 996.567 kb on + strand at 996.568 kb on - strand at 996.568 kb on - strand at 996.582 kb on + strand at 996.625 kb on + strand at 996.625 kb on + strand at 996.626 kb on - strand at 996.702 kb on + strand, within Psyr_0874 at 996.702 kb on + strand, within Psyr_0874 at 996.819 kb on + strand, within Psyr_0874 at 996.819 kb on + strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 996.820 kb on - strand, within Psyr_0874 at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.018 kb on + strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.019 kb on - strand at 997.034 kb on + strand at 997.034 kb on + strand at 997.034 kb on + strand at 997.035 kb on - strand at 997.035 kb on - strand at 997.211 kb on + strand, within Psyr_0875 at 997.244 kb on + strand, within Psyr_0875 at 997.344 kb on + strand, within Psyr_0875
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 994,975 + Psyr_0872 0.45 +1.0 994,975 + Psyr_0872 0.45 -1.8 994,976 - Psyr_0872 0.45 +0.8 994,979 + Psyr_0872 0.45 -1.6 995,032 + Psyr_0872 0.48 -0.6 995,198 - Psyr_0872 0.59 +2.0 995,283 + Psyr_0872 0.64 -0.1 995,284 - Psyr_0872 0.64 +0.4 995,284 - Psyr_0872 0.64 +0.8 995,296 + Psyr_0872 0.65 +0.2 995,296 + Psyr_0872 0.65 +0.1 995,296 + Psyr_0872 0.65 -0.1 995,296 + Psyr_0872 0.65 -0.2 995,296 + Psyr_0872 0.65 -0.4 995,296 + Psyr_0872 0.65 -1.2 995,296 + Psyr_0872 0.65 -0.2 995,296 + Psyr_0872 0.65 +0.9 995,296 + Psyr_0872 0.65 +0.2 995,296 + Psyr_0872 0.65 +0.4 995,297 - Psyr_0872 0.65 +0.7 995,297 - Psyr_0872 0.65 +0.9 995,297 - Psyr_0872 0.65 +0.3 995,297 - Psyr_0872 0.65 -0.4 995,297 - Psyr_0872 0.65 -1.2 995,297 - Psyr_0872 0.65 +0.0 995,302 + Psyr_0872 0.66 -0.7 995,302 + Psyr_0872 0.66 +0.3 995,302 + Psyr_0872 0.66 +1.9 995,302 + Psyr_0872 0.66 +0.4 995,303 - Psyr_0872 0.66 +1.1 995,303 - Psyr_0872 0.66 -1.9 995,303 - Psyr_0872 0.66 -0.3 995,303 - Psyr_0872 0.66 -0.5 995,303 - Psyr_0872 0.66 +2.0 995,303 - Psyr_0872 0.66 -2.2 995,303 - Psyr_0872 0.66 +0.4 995,303 - Psyr_0872 0.66 +0.1 995,303 - Psyr_0872 0.66 -0.1 995,303 - Psyr_0872 0.66 -3.2 995,366 - Psyr_0872 0.70 +1.6 995,491 + Psyr_0872 0.78 +0.9 995,517 + Psyr_0872 0.79 -1.6 995,517 + Psyr_0872 0.79 +1.8 995,578 - Psyr_0872 0.83 -1.4 995,578 - Psyr_0872 0.83 +0.3 995,784 + +0.6 995,785 - -0.1 995,785 - -2.2 995,785 - -0.3 995,785 - +2.0 995,785 - -0.4 995,808 - +0.2 995,865 + +1.0 995,936 - Psyr_0873 0.17 -0.4 995,946 + Psyr_0873 0.19 -0.4 995,946 + Psyr_0873 0.19 +1.3 995,947 - Psyr_0873 0.19 -1.5 995,947 - Psyr_0873 0.19 -0.8 995,947 - Psyr_0873 0.19 -0.4 995,947 - Psyr_0873 0.19 +1.3 995,947 - Psyr_0873 0.19 -0.3 996,075 + Psyr_0873 0.42 +1.1 996,076 - Psyr_0873 0.42 -0.1 996,407 + +0.6 996,408 - +0.2 996,481 + +0.6 996,481 + +0.9 996,481 + +0.2 996,482 - -1.1 996,482 - +0.4 996,482 - -1.6 996,497 + -1.5 996,497 + -1.9 996,497 + -0.1 996,497 + -0.4 996,497 + +0.1 996,497 + -1.7 996,498 - -1.3 996,503 + +0.5 996,504 - +0.7 996,514 + +0.1 996,514 + -2.6 996,514 + -0.7 996,514 + -1.9 996,514 + -2.2 996,514 + +2.3 996,514 + -1.3 996,515 - +0.7 996,515 - -0.3 996,515 - +1.6 996,515 - -0.4 996,515 - +0.8 996,515 - +0.2 996,525 + -0.1 996,526 - +0.2 996,526 - -0.2 996,526 - -0.9 996,526 - +0.2 996,526 - +1.0 996,536 + -0.3 996,536 + +1.1 996,536 + +2.6 996,537 - +1.0 996,537 - +0.3 996,567 + -0.3 996,567 + +0.3 996,568 - -1.0 996,568 - -0.4 996,582 + -1.1 996,625 + -0.7 996,625 + +0.1 996,626 - -0.2 996,702 + Psyr_0874 0.24 -1.0 996,702 + Psyr_0874 0.24 -0.9 996,819 + Psyr_0874 0.52 -1.4 996,819 + Psyr_0874 0.52 +0.8 996,820 - Psyr_0874 0.53 +1.4 996,820 - Psyr_0874 0.53 +0.5 996,820 - Psyr_0874 0.53 +0.8 997,018 + -2.3 997,018 + -0.6 997,018 + -0.4 997,018 + +1.1 997,018 + +0.5 997,018 + -1.7 997,018 + -1.4 997,018 + -0.5 997,019 - +0.8 997,019 - +0.8 997,019 - +2.1 997,019 - +0.2 997,019 - +1.1 997,034 + -0.5 997,034 + -0.0 997,034 + -0.2 997,035 - +1.1 997,035 - -0.4 997,211 + Psyr_0875 0.26 +0.9 997,244 + Psyr_0875 0.30 -1.9 997,344 + Psyr_0875 0.43 -0.5
Or see this region's nucleotide sequence