Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0695 and Rru_A0696 are separated by 4 nucleotides Rru_A0696 and Rru_A0697 overlap by 4 nucleotides
Rru_A0695: Rru_A0695 - 2-isopropylmalate synthase/homocitrate synthase (NCBI), at 823,804 to 825,405
_A0695
Rru_A0696: Rru_A0696 - RNA methyltransferase TrmH, group 1 (NCBI), at 825,410 to 826,249
_A0696
Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652
_A0697
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.747 kb on - strand, within Rru_A0695 at 824.755 kb on - strand, within Rru_A0695 at 824.926 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.102 kb on + strand, within Rru_A0695 at 825.175 kb on + strand, within Rru_A0695 at 825.208 kb on + strand, within Rru_A0695 at 825.219 kb on + strand, within Rru_A0695 at 825.322 kb on - strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.338 kb on - strand at 825.340 kb on - strand at 825.340 kb on - strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.365 kb on - strand at 825.366 kb on + strand at 825.366 kb on + strand at 825.367 kb on - strand at 825.407 kb on - strand at 825.872 kb on + strand, within Rru_A0696 at 825.923 kb on + strand, within Rru_A0696 at 826.524 kb on + strand, within Rru_A0697 at 826.525 kb on - strand, within Rru_A0697 at 826.563 kb on - strand, within Rru_A0697 at 826.714 kb on + strand, within Rru_A0697 at 826.714 kb on + strand, within Rru_A0697 at 826.714 kb on + strand, within Rru_A0697 at 826.716 kb on + strand, within Rru_A0697 at 826.717 kb on - strand, within Rru_A0697 at 826.717 kb on - strand, within Rru_A0697 at 826.717 kb on - strand, within Rru_A0697 at 826.945 kb on + strand, within Rru_A0697
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 824,455 - Rru_A0695 0.41 -0.0 824,455 - Rru_A0695 0.41 +0.6 824,455 - Rru_A0695 0.41 -0.0 824,747 - Rru_A0695 0.59 -0.5 824,755 - Rru_A0695 0.59 -0.0 824,926 + Rru_A0695 0.70 -0.0 825,100 + Rru_A0695 0.81 -0.0 825,100 + Rru_A0695 0.81 -0.0 825,100 + Rru_A0695 0.81 -0.0 825,100 + Rru_A0695 0.81 -1.6 825,101 - Rru_A0695 0.81 -0.0 825,101 - Rru_A0695 0.81 -0.0 825,102 + Rru_A0695 0.81 +0.4 825,175 + Rru_A0695 0.86 -0.2 825,208 + Rru_A0695 0.88 -0.0 825,219 + Rru_A0695 0.88 -0.5 825,322 - -1.8 825,337 + -0.0 825,337 + -1.6 825,337 + -0.0 825,337 + -0.0 825,338 - -0.9 825,340 - -1.0 825,340 - -0.0 825,364 + -0.8 825,364 + -0.8 825,364 + -0.3 825,365 - -1.6 825,366 + +0.5 825,366 + +0.2 825,367 - -2.0 825,407 - -0.0 825,872 + Rru_A0696 0.55 -0.0 825,923 + Rru_A0696 0.61 -0.0 826,524 + Rru_A0697 0.20 -0.0 826,525 - Rru_A0697 0.20 -0.0 826,563 - Rru_A0697 0.23 +1.0 826,714 + Rru_A0697 0.33 -0.0 826,714 + Rru_A0697 0.33 -0.0 826,714 + Rru_A0697 0.33 -0.0 826,716 + Rru_A0697 0.33 -0.0 826,717 - Rru_A0697 0.33 +0.1 826,717 - Rru_A0697 0.33 -0.0 826,717 - Rru_A0697 0.33 +0.5 826,945 + Rru_A0697 0.50 -1.0
Or see this region's nucleotide sequence