Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0282

Experiment: Succinic Acid; Light intensity 150 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0281 and Rru_A0282 are separated by 172 nucleotidesRru_A0282 and Rru_A0283 are separated by 280 nucleotidesRru_A0283 and Rru_A0284 are separated by 33 nucleotides Rru_A0281: Rru_A0281 - Queuosine biosynthesis protein (NCBI), at 345,720 to 346,757 _A0281 Rru_A0282: Rru_A0282 - Protein of unknown function DUF204 (NCBI), at 346,930 to 347,511 _A0282 Rru_A0283: Rru_A0283 - hypothetical protein (NCBI), at 347,792 to 348,295 _A0283 Rru_A0284: Rru_A0284 - acetolactate synthase (NCBI), at 348,329 to 350,059 _A0284 Position (kb) 346 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.109 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.262 kb on - strand, within Rru_A0281at 346.310 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.336 kb on + strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.601 kb on + strand, within Rru_A0281at 346.867 kb on - strandat 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.535 kb on + strandat 347.536 kb on - strandat 347.716 kb on + strandat 347.716 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.892 kb on - strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.273 kb on + strandat 348.273 kb on + strandat 348.274 kb on - strandat 348.349 kb on + strandat 348.406 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 150 uM
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346,109 + Rru_A0281 0.37 +0.2
346,218 + Rru_A0281 0.48 -1.8
346,218 + Rru_A0281 0.48 +0.2
346,218 + Rru_A0281 0.48 -1.6
346,218 + Rru_A0281 0.48 -1.5
346,219 - Rru_A0281 0.48 +0.2
346,219 - Rru_A0281 0.48 -1.8
346,219 - Rru_A0281 0.48 -3.3
346,262 - Rru_A0281 0.52 +0.2
346,310 + Rru_A0281 0.57 -2.1
346,312 + Rru_A0281 0.57 +0.2
346,312 + Rru_A0281 0.57 -1.1
346,313 - Rru_A0281 0.57 -2.8
346,313 - Rru_A0281 0.57 +0.6
346,329 - Rru_A0281 0.59 -2.3
346,329 - Rru_A0281 0.59 -1.9
346,329 - Rru_A0281 0.59 -1.6
346,336 + Rru_A0281 0.59 +0.2
346,337 - Rru_A0281 0.59 +1.2
346,337 - Rru_A0281 0.59 -1.9
346,601 + Rru_A0281 0.85 -1.8
346,867 - -1.4
347,100 + Rru_A0282 0.29 -0.9
347,100 + Rru_A0282 0.29 -1.4
347,100 + Rru_A0282 0.29 -0.8
347,387 + Rru_A0282 0.79 -2.7
347,387 + Rru_A0282 0.79 -2.6
347,535 + +0.2
347,536 - +0.2
347,716 + -1.4
347,716 + +0.2
347,718 + -0.8
347,718 + -0.8
347,718 + -0.4
347,718 + +0.2
347,718 + -2.2
347,718 + +0.2
347,718 + -1.4
347,718 + -3.4
347,718 + -1.1
347,719 - -1.1
347,719 - -2.1
347,719 - -1.3
347,719 - -1.4
347,719 - -1.8
347,719 - -1.4
347,719 - +0.2
347,719 - +0.8
347,719 - +0.2
347,719 - +0.2
347,719 - -1.1
347,719 - -1.0
347,891 + Rru_A0283 0.20 -0.2
347,891 + Rru_A0283 0.20 -0.7
347,891 + Rru_A0283 0.20 -1.6
347,892 - Rru_A0283 0.20 +0.2
348,212 + Rru_A0283 0.83 +1.2
348,212 + Rru_A0283 0.83 +1.8
348,212 + Rru_A0283 0.83 +0.2
348,212 + Rru_A0283 0.83 +0.2
348,212 + Rru_A0283 0.83 +0.2
348,212 + Rru_A0283 0.83 -0.8
348,213 - Rru_A0283 0.84 +0.2
348,213 - Rru_A0283 0.84 -0.8
348,213 - Rru_A0283 0.84 +0.2
348,213 - Rru_A0283 0.84 -1.4
348,273 + -2.3
348,273 + +0.2
348,274 - +0.2
348,349 + +0.2
348,406 + -1.8
348,461 + +0.2
348,461 + -0.8
348,461 + -1.3
348,461 + -1.8
348,462 - +1.2

Or see this region's nucleotide sequence