Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06890

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06880 and BWI76_RS06885 are separated by 1 nucleotidesBWI76_RS06885 and BWI76_RS06890 are separated by 34 nucleotidesBWI76_RS06890 and BWI76_RS06895 are separated by 19 nucleotidesBWI76_RS06895 and BWI76_RS06900 overlap by 8 nucleotides BWI76_RS06880: BWI76_RS06880 - biopolymer transport protein ExbD/TolR, at 1,445,154 to 1,445,561 _RS06880 BWI76_RS06885: BWI76_RS06885 - TonB family protein, at 1,445,563 to 1,446,306 _RS06885 BWI76_RS06890: BWI76_RS06890 - TonB-dependent receptor, at 1,446,341 to 1,448,581 _RS06890 BWI76_RS06895: BWI76_RS06895 - biopolymer transporter ExbB, at 1,448,601 to 1,449,248 _RS06895 BWI76_RS06900: BWI76_RS06900 - phospholipase D, at 1,449,241 to 1,450,491 _RS06900 Position (kb) 1446 1447 1448 1449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1445.413 kb on + strand, within BWI76_RS06880at 1445.454 kb on + strand, within BWI76_RS06880at 1446.112 kb on - strand, within BWI76_RS06885at 1446.191 kb on - strand, within BWI76_RS06885at 1446.519 kb on - strandat 1446.596 kb on + strand, within BWI76_RS06890at 1446.622 kb on + strand, within BWI76_RS06890at 1446.758 kb on + strand, within BWI76_RS06890at 1446.834 kb on + strand, within BWI76_RS06890at 1446.884 kb on - strand, within BWI76_RS06890at 1446.902 kb on + strand, within BWI76_RS06890at 1446.912 kb on - strand, within BWI76_RS06890at 1446.912 kb on - strand, within BWI76_RS06890at 1447.069 kb on - strand, within BWI76_RS06890at 1447.087 kb on + strand, within BWI76_RS06890at 1447.107 kb on - strand, within BWI76_RS06890at 1447.224 kb on + strand, within BWI76_RS06890at 1447.236 kb on + strand, within BWI76_RS06890at 1447.244 kb on - strand, within BWI76_RS06890at 1447.244 kb on - strand, within BWI76_RS06890at 1447.320 kb on + strand, within BWI76_RS06890at 1447.355 kb on - strand, within BWI76_RS06890at 1447.380 kb on - strand, within BWI76_RS06890at 1447.457 kb on + strand, within BWI76_RS06890at 1447.617 kb on + strandat 1447.618 kb on - strand, within BWI76_RS06890at 1447.658 kb on + strand, within BWI76_RS06890at 1447.708 kb on + strand, within BWI76_RS06890at 1447.761 kb on - strand, within BWI76_RS06890at 1447.761 kb on - strand, within BWI76_RS06890at 1447.853 kb on - strand, within BWI76_RS06890at 1447.874 kb on + strand, within BWI76_RS06890at 1447.897 kb on - strand, within BWI76_RS06890at 1447.928 kb on - strand, within BWI76_RS06890at 1448.010 kb on - strand, within BWI76_RS06890at 1448.010 kb on - strand, within BWI76_RS06890at 1448.062 kb on + strand, within BWI76_RS06890at 1448.084 kb on + strand, within BWI76_RS06890at 1448.085 kb on - strand, within BWI76_RS06890at 1448.085 kb on - strand, within BWI76_RS06890at 1448.197 kb on + strandat 1448.227 kb on - strand, within BWI76_RS06890at 1448.512 kb on + strandat 1448.512 kb on + strandat 1448.520 kb on - strandat 1448.532 kb on - strandat 1448.550 kb on + strandat 1448.550 kb on + strandat 1448.558 kb on - strandat 1448.794 kb on + strand, within BWI76_RS06895at 1448.841 kb on + strand, within BWI76_RS06895at 1448.916 kb on - strand, within BWI76_RS06895at 1449.106 kb on - strand, within BWI76_RS06895at 1449.170 kb on - strand, within BWI76_RS06895at 1449.319 kb on - strandat 1449.363 kb on + strandat 1449.368 kb on - strand, within BWI76_RS06900at 1449.401 kb on - strand, within BWI76_RS06900at 1449.450 kb on + strand, within BWI76_RS06900

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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1,445,413 + BWI76_RS06880 0.63 -0.0
1,445,454 + BWI76_RS06880 0.74 -1.4
1,446,112 - BWI76_RS06885 0.74 -2.6
1,446,191 - BWI76_RS06885 0.84 -0.1
1,446,519 - -0.4
1,446,596 + BWI76_RS06890 0.11 +2.6
1,446,622 + BWI76_RS06890 0.13 -1.0
1,446,758 + BWI76_RS06890 0.19 +0.3
1,446,834 + BWI76_RS06890 0.22 -3.0
1,446,884 - BWI76_RS06890 0.24 -0.1
1,446,902 + BWI76_RS06890 0.25 -0.6
1,446,912 - BWI76_RS06890 0.25 +0.4
1,446,912 - BWI76_RS06890 0.25 -2.1
1,447,069 - BWI76_RS06890 0.32 -2.5
1,447,087 + BWI76_RS06890 0.33 -0.1
1,447,107 - BWI76_RS06890 0.34 +2.5
1,447,224 + BWI76_RS06890 0.39 -2.7
1,447,236 + BWI76_RS06890 0.40 +0.0
1,447,244 - BWI76_RS06890 0.40 -1.5
1,447,244 - BWI76_RS06890 0.40 -0.9
1,447,320 + BWI76_RS06890 0.44 +0.4
1,447,355 - BWI76_RS06890 0.45 +0.1
1,447,380 - BWI76_RS06890 0.46 -1.0
1,447,457 + BWI76_RS06890 0.50 -1.5
1,447,617 + -0.8
1,447,618 - BWI76_RS06890 0.57 +0.7
1,447,658 + BWI76_RS06890 0.59 -1.0
1,447,708 + BWI76_RS06890 0.61 -0.7
1,447,761 - BWI76_RS06890 0.63 +0.1
1,447,761 - BWI76_RS06890 0.63 -0.2
1,447,853 - BWI76_RS06890 0.67 +0.6
1,447,874 + BWI76_RS06890 0.68 +0.1
1,447,897 - BWI76_RS06890 0.69 -0.4
1,447,928 - BWI76_RS06890 0.71 -0.3
1,448,010 - BWI76_RS06890 0.74 -0.6
1,448,010 - BWI76_RS06890 0.74 -3.2
1,448,062 + BWI76_RS06890 0.77 -0.7
1,448,084 + BWI76_RS06890 0.78 -1.0
1,448,085 - BWI76_RS06890 0.78 -0.2
1,448,085 - BWI76_RS06890 0.78 -0.2
1,448,197 + +0.7
1,448,227 - BWI76_RS06890 0.84 -4.5
1,448,512 + +0.6
1,448,512 + -0.1
1,448,520 - -3.0
1,448,532 - +0.1
1,448,550 + -0.7
1,448,550 + -1.2
1,448,558 - -4.2
1,448,794 + BWI76_RS06895 0.30 -0.7
1,448,841 + BWI76_RS06895 0.37 +0.1
1,448,916 - BWI76_RS06895 0.49 -2.4
1,449,106 - BWI76_RS06895 0.78 -1.4
1,449,170 - BWI76_RS06895 0.88 -0.1
1,449,319 - -1.6
1,449,363 + +0.4
1,449,368 - BWI76_RS06900 0.10 -0.3
1,449,401 - BWI76_RS06900 0.13 -1.3
1,449,450 + BWI76_RS06900 0.17 +0.3

Or see this region's nucleotide sequence