Experiment: deoxycholate 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5138 and Pf6N2E2_5139 overlap by 4 nucleotides Pf6N2E2_5139 and Pf6N2E2_5140 are separated by 11 nucleotides Pf6N2E2_5140 and Pf6N2E2_5141 are separated by 1 nucleotides
Pf6N2E2_5138 - FIG003276: zinc-binding protein, at 5,922,581 to 5,922,781
_5138
Pf6N2E2_5139 - Dephospho-CoA kinase (EC 2.7.1.24), at 5,922,778 to 5,923,389
_5139
Pf6N2E2_5140 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 5,923,401 to 5,924,270
_5140
Pf6N2E2_5141 - Type IV fimbrial assembly protein PilC, at 5,924,272 to 5,925,489
_5141
Position (kb) 5923
5924
5925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5922.429 kb on + strand at 5922.429 kb on + strand at 5922.801 kb on + strand at 5922.801 kb on + strand at 5922.802 kb on - strand at 5922.802 kb on - strand at 5922.802 kb on - strand at 5923.396 kb on - strand at 5923.403 kb on - strand at 5923.403 kb on - strand at 5923.403 kb on - strand at 5923.424 kb on - strand at 5923.424 kb on - strand at 5923.424 kb on - strand at 5923.480 kb on + strand at 5923.532 kb on + strand, within Pf6N2E2_5140 at 5923.532 kb on + strand at 5923.533 kb on - strand, within Pf6N2E2_5140 at 5923.533 kb on - strand, within Pf6N2E2_5140 at 5924.002 kb on + strand, within Pf6N2E2_5140 at 5924.002 kb on + strand, within Pf6N2E2_5140 at 5924.003 kb on - strand, within Pf6N2E2_5140 at 5924.003 kb on - strand, within Pf6N2E2_5140 at 5924.243 kb on - strand at 5924.243 kb on - strand at 5924.306 kb on + strand at 5924.306 kb on + strand at 5924.306 kb on + strand at 5924.306 kb on + strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.307 kb on - strand at 5924.411 kb on + strand, within Pf6N2E2_5141 at 5924.412 kb on - strand, within Pf6N2E2_5141 at 5924.412 kb on - strand, within Pf6N2E2_5141 at 5924.412 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.688 kb on - strand, within Pf6N2E2_5141 at 5924.768 kb on + strand, within Pf6N2E2_5141 at 5924.972 kb on + strand, within Pf6N2E2_5141 at 5924.973 kb on - strand, within Pf6N2E2_5141 at 5925.023 kb on + strand, within Pf6N2E2_5141 at 5925.023 kb on + strand, within Pf6N2E2_5141 at 5925.023 kb on + strand, within Pf6N2E2_5141 at 5925.024 kb on - strand, within Pf6N2E2_5141 at 5925.092 kb on + strand, within Pf6N2E2_5141 at 5925.092 kb on + strand, within Pf6N2E2_5141 at 5925.092 kb on + strand, within Pf6N2E2_5141 at 5925.093 kb on - strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141 at 5925.107 kb on + strand, within Pf6N2E2_5141
Per-strain Table
Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M remove 5,922,429 + +0.6 5,922,429 + +2.1 5,922,801 + +1.3 5,922,801 + +0.6 5,922,802 - -3.0 5,922,802 - +0.9 5,922,802 - +1.5 5,923,396 - -2.0 5,923,403 - +1.6 5,923,403 - -2.2 5,923,403 - +1.0 5,923,424 - +0.5 5,923,424 - +1.0 5,923,424 - +2.0 5,923,480 + -0.3 5,923,532 + Pf6N2E2_5140 0.15 -1.7 5,923,532 + +1.2 5,923,533 - Pf6N2E2_5140 0.15 -2.1 5,923,533 - Pf6N2E2_5140 0.15 +1.4 5,924,002 + Pf6N2E2_5140 0.69 -1.0 5,924,002 + Pf6N2E2_5140 0.69 -3.0 5,924,003 - Pf6N2E2_5140 0.69 -2.4 5,924,003 - Pf6N2E2_5140 0.69 +2.4 5,924,243 - +1.2 5,924,243 - +2.0 5,924,306 + -1.4 5,924,306 + +1.3 5,924,306 + -0.4 5,924,306 + -0.8 5,924,307 - +0.0 5,924,307 - -0.1 5,924,307 - -2.8 5,924,307 - +1.0 5,924,307 - +1.2 5,924,411 + Pf6N2E2_5141 0.11 -2.2 5,924,412 - Pf6N2E2_5141 0.11 -2.2 5,924,412 - Pf6N2E2_5141 0.11 -0.0 5,924,412 - Pf6N2E2_5141 0.11 +3.2 5,924,688 - Pf6N2E2_5141 0.34 +1.5 5,924,688 - Pf6N2E2_5141 0.34 +2.2 5,924,688 - Pf6N2E2_5141 0.34 -1.5 5,924,688 - Pf6N2E2_5141 0.34 -2.2 5,924,768 + Pf6N2E2_5141 0.41 -0.3 5,924,972 + Pf6N2E2_5141 0.57 +2.1 5,924,973 - Pf6N2E2_5141 0.58 +1.1 5,925,023 + Pf6N2E2_5141 0.62 +0.4 5,925,023 + Pf6N2E2_5141 0.62 -2.3 5,925,023 + Pf6N2E2_5141 0.62 +0.1 5,925,024 - Pf6N2E2_5141 0.62 +1.0 5,925,092 + Pf6N2E2_5141 0.67 +0.2 5,925,092 + Pf6N2E2_5141 0.67 -1.0 5,925,092 + Pf6N2E2_5141 0.67 +2.6 5,925,093 - Pf6N2E2_5141 0.67 +0.2 5,925,107 + Pf6N2E2_5141 0.69 -1.8 5,925,107 + Pf6N2E2_5141 0.69 +0.2 5,925,107 + Pf6N2E2_5141 0.69 -1.7 5,925,107 + Pf6N2E2_5141 0.69 -0.1
Or see this region's nucleotide sequence