Experiment: deoxycholate 0.0125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_277 and Pf6N2E2_278 are separated by 871 nucleotides Pf6N2E2_278 and Pf6N2E2_279 are separated by 107 nucleotides
Pf6N2E2_277 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 342,559 to 342,972
_277
Pf6N2E2_278 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 343,844 to 345,766
_278
Pf6N2E2_279 - Isocitrate lyase (EC 4.1.3.1), at 345,874 to 347,199
_279
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 343.016 kb on - strand at 343.036 kb on - strand at 343.106 kb on - strand at 343.118 kb on - strand at 343.125 kb on + strand at 343.126 kb on - strand at 343.189 kb on - strand at 343.189 kb on - strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.270 kb on - strand at 343.270 kb on - strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.332 kb on + strand at 343.354 kb on + strand at 343.549 kb on + strand at 343.550 kb on - strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.557 kb on - strand at 343.557 kb on - strand at 343.634 kb on + strand at 343.634 kb on + strand at 343.635 kb on - strand at 343.701 kb on - strand at 343.701 kb on - strand at 343.752 kb on - strand at 343.752 kb on - strand at 343.759 kb on + strand at 343.759 kb on + strand at 343.775 kb on - strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.796 kb on + strand at 343.796 kb on + strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.829 kb on + strand at 343.830 kb on - strand at 343.991 kb on - strand at 344.039 kb on + strand, within Pf6N2E2_278 at 344.206 kb on + strand, within Pf6N2E2_278 at 344.206 kb on + strand, within Pf6N2E2_278 at 344.307 kb on + strand, within Pf6N2E2_278 at 344.308 kb on - strand, within Pf6N2E2_278 at 344.308 kb on - strand, within Pf6N2E2_278 at 344.349 kb on - strand, within Pf6N2E2_278 at 344.393 kb on + strand, within Pf6N2E2_278 at 344.510 kb on + strand, within Pf6N2E2_278 at 344.511 kb on - strand, within Pf6N2E2_278 at 344.585 kb on - strand, within Pf6N2E2_278 at 344.585 kb on - strand, within Pf6N2E2_278 at 344.660 kb on + strand, within Pf6N2E2_278 at 344.848 kb on + strand, within Pf6N2E2_278 at 344.848 kb on + strand, within Pf6N2E2_278 at 344.893 kb on + strand, within Pf6N2E2_278 at 344.894 kb on - strand, within Pf6N2E2_278 at 345.469 kb on + strand, within Pf6N2E2_278 at 345.661 kb on - strand at 345.661 kb on - strand at 346.001 kb on + strand at 346.002 kb on - strand at 346.071 kb on - strand, within Pf6N2E2_279 at 346.142 kb on + strand, within Pf6N2E2_279 at 346.143 kb on - strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.230 kb on - strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.480 kb on - strand, within Pf6N2E2_279 at 346.670 kb on + strand, within Pf6N2E2_279 at 346.728 kb on - strand, within Pf6N2E2_279 at 346.736 kb on + strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279
Per-strain Table
Position Strand Gene LocusTag Fraction deoxycholate 0.0125 M remove 343,016 - +0.8 343,036 - -0.9 343,106 - +0.0 343,118 - -0.9 343,125 + -1.2 343,126 - +0.9 343,189 - -1.2 343,189 - -2.9 343,269 + +0.7 343,269 + -0.5 343,269 + -0.3 343,269 + +0.7 343,270 - +3.6 343,270 - -0.7 343,294 + +2.3 343,294 + -0.5 343,294 + +1.8 343,294 + -0.2 343,332 + +0.3 343,354 + +0.2 343,549 + -2.0 343,550 - +0.9 343,556 + -0.3 343,556 + -2.7 343,556 + -2.3 343,556 + -1.7 343,556 + +0.5 343,557 - -1.3 343,557 - +0.1 343,634 + +2.2 343,634 + -1.2 343,635 - +2.3 343,701 - -2.7 343,701 - +0.1 343,752 - +1.8 343,752 - +0.2 343,759 + -0.9 343,759 + -1.7 343,775 - -0.6 343,792 + -2.9 343,792 + +1.5 343,792 + -0.7 343,792 + +2.7 343,792 + -0.8 343,793 - +0.9 343,793 - +1.3 343,793 - +1.7 343,793 - +1.2 343,793 - +0.2 343,793 - -0.3 343,793 - -2.7 343,793 - +0.0 343,793 - -2.2 343,793 - +1.1 343,793 - +0.9 343,796 + +0.2 343,796 + +0.2 343,797 - -2.1 343,797 - +2.4 343,797 - +2.3 343,797 - +0.5 343,797 - -2.3 343,829 + -1.2 343,830 - +2.7 343,991 - -1.2 344,039 + Pf6N2E2_278 0.10 -2.9 344,206 + Pf6N2E2_278 0.19 +0.5 344,206 + Pf6N2E2_278 0.19 -1.5 344,307 + Pf6N2E2_278 0.24 -2.4 344,308 - Pf6N2E2_278 0.24 -3.3 344,308 - Pf6N2E2_278 0.24 +1.7 344,349 - Pf6N2E2_278 0.26 +1.5 344,393 + Pf6N2E2_278 0.29 +0.8 344,510 + Pf6N2E2_278 0.35 +0.4 344,511 - Pf6N2E2_278 0.35 -0.7 344,585 - Pf6N2E2_278 0.39 -1.3 344,585 - Pf6N2E2_278 0.39 -1.6 344,660 + Pf6N2E2_278 0.42 -1.6 344,848 + Pf6N2E2_278 0.52 +0.9 344,848 + Pf6N2E2_278 0.52 -2.4 344,893 + Pf6N2E2_278 0.55 +1.7 344,894 - Pf6N2E2_278 0.55 -1.6 345,469 + Pf6N2E2_278 0.85 +0.2 345,661 - -3.1 345,661 - +1.7 346,001 + -2.3 346,002 - +0.9 346,071 - Pf6N2E2_279 0.15 +0.1 346,142 + Pf6N2E2_279 0.20 -0.2 346,143 - Pf6N2E2_279 0.20 -0.4 346,229 + Pf6N2E2_279 0.27 +0.4 346,229 + Pf6N2E2_279 0.27 +1.7 346,229 + Pf6N2E2_279 0.27 +1.7 346,230 - Pf6N2E2_279 0.27 -1.5 346,388 + Pf6N2E2_279 0.39 +1.5 346,388 + Pf6N2E2_279 0.39 +2.6 346,388 + Pf6N2E2_279 0.39 +1.2 346,388 + Pf6N2E2_279 0.39 -1.7 346,388 + Pf6N2E2_279 0.39 +1.3 346,388 + Pf6N2E2_279 0.39 -0.3 346,389 - Pf6N2E2_279 0.39 +1.0 346,389 - Pf6N2E2_279 0.39 -0.9 346,389 - Pf6N2E2_279 0.39 -0.4 346,480 - Pf6N2E2_279 0.46 +0.1 346,670 + Pf6N2E2_279 0.60 -2.2 346,728 - Pf6N2E2_279 0.64 -0.3 346,736 + Pf6N2E2_279 0.65 +1.9 346,737 - Pf6N2E2_279 0.65 +0.8 346,737 - Pf6N2E2_279 0.65 +1.5 346,737 - Pf6N2E2_279 0.65 +2.1
Or see this region's nucleotide sequence