Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2814

Experiment: N2E2wt with N1B4m denitrifying repA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N2E2wt with N1B4m denitrifying repA
3,154,788	+				-0.3
3,154,788	+				-1.6
3,154,862	+		Pf1N1B4_2812	0.16	+0.7
3,154,862	+		Pf1N1B4_2812	0.16	-1.0
3,154,862	+		Pf1N1B4_2812	0.16	-1.6
3,154,862	+		Pf1N1B4_2812	0.16	-0.5
3,154,863	-		Pf1N1B4_2812	0.16	-1.9
3,154,863	-		Pf1N1B4_2812	0.16	-0.4
3,154,863	-		Pf1N1B4_2812	0.16	-0.6
3,154,863	-		Pf1N1B4_2812	0.16	+0.3
3,154,863	-		Pf1N1B4_2812	0.16	+0.7
3,154,863	-		Pf1N1B4_2812	0.16	-0.5
3,154,863	-		Pf1N1B4_2812	0.16	+0.6
3,154,863	-		Pf1N1B4_2812	0.16	+1.5
3,154,863	-		Pf1N1B4_2812	0.16	+0.7
3,154,863	-		Pf1N1B4_2812	0.16	-0.3
3,155,049	+		Pf1N1B4_2812	0.42	-0.3
3,155,049	+		Pf1N1B4_2812	0.42	-1.4
3,155,050	-		Pf1N1B4_2812	0.42	-1.6
3,155,050	-		Pf1N1B4_2812	0.42	+0.7
3,155,050	-		Pf1N1B4_2812	0.42	-3.0
3,155,135	+		Pf1N1B4_2812	0.54	-0.9
3,155,136	-		Pf1N1B4_2812	0.54	-2.8
3,155,145	+		Pf1N1B4_2812	0.55	+0.7
3,155,145	+		Pf1N1B4_2812	0.55	+0.7
3,155,195	+		Pf1N1B4_2812	0.62	+0.7
3,155,196	-		Pf1N1B4_2812	0.62	+1.2
3,155,196	-		Pf1N1B4_2812	0.62	-1.3
3,155,196	-		Pf1N1B4_2812	0.62	+0.7
3,155,196	-		Pf1N1B4_2812	0.62	+0.7
3,155,333	+		Pf1N1B4_2812	0.82	-0.6
3,155,333	+		Pf1N1B4_2812	0.82	+0.7
3,155,482	-				+0.2
3,155,482	-				-1.3
3,155,586	+		Pf1N1B4_2813	0.35	-1.6
3,155,587	-		Pf1N1B4_2813	0.36	-0.1
3,155,587	-		Pf1N1B4_2813	0.36	-2.1
3,155,587	-		Pf1N1B4_2813	0.36	+0.5
3,155,688	+		Pf1N1B4_2813	0.68	-2.5
3,155,688	+		Pf1N1B4_2813	0.68	+0.1
3,155,688	+		Pf1N1B4_2813	0.68	+0.7
3,155,688	+		Pf1N1B4_2813	0.68	-2.6
3,155,689	-		Pf1N1B4_2813	0.68	-1.6
3,155,689	-		Pf1N1B4_2813	0.68	+0.7
3,155,689	-		Pf1N1B4_2813	0.68	-1.9
3,155,689	-		Pf1N1B4_2813	0.68	-1.3
3,155,692	+		Pf1N1B4_2813	0.69	-0.6
3,155,692	+		Pf1N1B4_2813	0.69	+0.7
3,155,692	+		Pf1N1B4_2813	0.69	+0.5
3,155,692	+		Pf1N1B4_2813	0.69	-2.1
3,155,692	+		Pf1N1B4_2813	0.69	-1.8
3,155,692	+		Pf1N1B4_2813	0.69	-0.0
3,155,692	+		Pf1N1B4_2813	0.69	-0.9
3,155,692	+		Pf1N1B4_2813	0.69	-1.1
3,155,692	+		Pf1N1B4_2813	0.69	+0.7
3,155,692	+		Pf1N1B4_2813	0.69	+1.7
3,155,693	-		Pf1N1B4_2813	0.70	+0.1
3,155,693	-		Pf1N1B4_2813	0.70	+0.7
3,155,693	-		Pf1N1B4_2813	0.70	-3.1
3,155,693	-		Pf1N1B4_2813	0.70	-1.8
3,155,693	-		Pf1N1B4_2813	0.70	+1.0
3,155,693	-		Pf1N1B4_2813	0.70	-2.1
3,155,693	-		Pf1N1B4_2813	0.70	+0.1
3,155,693	-		Pf1N1B4_2813	0.70	-0.1
3,155,693	-		Pf1N1B4_2813	0.70	+0.7
3,155,857	+		Pf1N1B4_2814	0.43	+1.7
3,155,858	-		Pf1N1B4_2814	0.43	-1.6
3,155,936	+		Pf1N1B4_2814	0.89	-0.9
3,155,936	+		Pf1N1B4_2814	0.89	-2.3
3,155,936	+		Pf1N1B4_2814	0.89	-0.1
3,155,936	+		Pf1N1B4_2814	0.89	-0.9
3,155,937	-		Pf1N1B4_2814	0.89	+0.4
3,155,937	-		Pf1N1B4_2814	0.89	-3.0
3,155,937	-		Pf1N1B4_2814	0.89	+0.7
3,155,937	-		Pf1N1B4_2814	0.89	-2.5
3,155,937	-		Pf1N1B4_2814	0.89	+0.7
3,155,937	-		Pf1N1B4_2814	0.89	-2.9
3,155,937	-		Pf1N1B4_2814	0.89	-1.9
3,155,937	-		Pf1N1B4_2814	0.89	-2.1
3,155,937	-		Pf1N1B4_2814	0.89	-0.9
3,155,937	-		Pf1N1B4_2814	0.89	+0.7
3,155,940	+				-0.0
3,155,940	+				-0.3
3,155,940	+				-2.5
3,155,940	+				-0.3
3,155,940	+				-0.2
3,155,940	+				-0.3
3,155,941	-				+0.7
3,155,941	-				+0.7
3,155,941	-				-1.0
3,155,941	-				-0.4
3,155,941	-				-0.7
3,155,941	-				+0.7
3,155,941	-				-1.9
3,155,941	-				-0.7
3,155,941	-				+0.7
3,155,941	-				+0.7
3,155,949	+				+0.5
3,155,950	-				+2.2
3,155,950	-				-3.0
3,155,950	-				+3.0
3,156,016	+				+0.5
3,156,017	-				-2.3
3,156,034	+				-0.7
3,156,035	-				-2.3
3,156,098	+				-1.1
3,156,098	+				+0.0
3,156,120	+				+1.0
3,156,120	+				+0.7
3,156,120	+				+0.7
3,156,120	+				+0.1
3,156,120	+				-0.3
3,156,121	-				-0.4
3,156,121	-				-0.0
3,156,121	-				-1.5
3,156,121	-				-0.3
3,156,132	+				+0.7
3,156,132	+				-3.3
3,156,133	-				-4.3
3,156,133	-				+1.0
3,156,169	-				+0.4
3,156,181	-				+0.4
3,156,367	-		Pf1N1B4_2815	0.14	+0.7
3,156,367	-		Pf1N1B4_2815	0.14	+0.7
3,156,367	-		Pf1N1B4_2815	0.14	-3.1
3,156,367	-		Pf1N1B4_2815	0.14	+0.8
3,156,367	-		Pf1N1B4_2815	0.14	-0.8
3,156,367	-		Pf1N1B4_2815	0.14	-3.0
3,156,373	+		Pf1N1B4_2815	0.14	-0.9
3,156,374	-		Pf1N1B4_2815	0.14	-1.2
3,156,385	+		Pf1N1B4_2815	0.14	+0.7
3,156,385	+		Pf1N1B4_2815	0.14	+0.1
3,156,385	+		Pf1N1B4_2815	0.14	+0.7
3,156,385	+				+0.7
3,156,385	+		Pf1N1B4_2815	0.14	-2.3
3,156,386	-		Pf1N1B4_2815	0.14	-1.1
3,156,386	-		Pf1N1B4_2815	0.14	+0.7
3,156,386	-		Pf1N1B4_2815	0.14	+0.1
3,156,386	-		Pf1N1B4_2815	0.14	+0.7
3,156,394	+		Pf1N1B4_2815	0.15	-2.1
3,156,394	+		Pf1N1B4_2815	0.15	-2.5
3,156,394	+		Pf1N1B4_2815	0.15	-3.2
3,156,394	+		Pf1N1B4_2815	0.15	+0.7
3,156,559	-		Pf1N1B4_2815	0.20	-2.2
3,156,574	+		Pf1N1B4_2815	0.20	-0.5
3,156,574	+		Pf1N1B4_2815	0.20	-2.4
3,156,575	-		Pf1N1B4_2815	0.20	-0.6
3,156,576	+		Pf1N1B4_2815	0.20	+0.3
3,156,576	+		Pf1N1B4_2815	0.20	-1.2
3,156,576	+		Pf1N1B4_2815	0.20	-0.4
3,156,577	-		Pf1N1B4_2815	0.20	-2.7
3,156,577	-		Pf1N1B4_2815	0.20	+0.7
3,156,577	-		Pf1N1B4_2815	0.20	+0.7
3,156,646	+		Pf1N1B4_2815	0.23	+0.7
3,156,646	+				+0.7
3,156,647	-		Pf1N1B4_2815	0.23	+0.7
3,156,647	-		Pf1N1B4_2815	0.23	-0.4
3,156,712	+		Pf1N1B4_2815	0.25	-0.2
3,156,712	+		Pf1N1B4_2815	0.25	-0.3
3,156,713	-		Pf1N1B4_2815	0.25	-2.1
3,156,713	-		Pf1N1B4_2815	0.25	-0.3
3,156,715	+		Pf1N1B4_2815	0.25	+0.7
3,156,716	-		Pf1N1B4_2815	0.25	-0.6
3,156,752	-		Pf1N1B4_2815	0.26	-3.3
3,156,775	+				+0.7
3,156,775	+		Pf1N1B4_2815	0.27	-1.2
3,156,775	+		Pf1N1B4_2815	0.27	-1.8
3,156,775	+		Pf1N1B4_2815	0.27	+0.2
3,156,775	+				-2.3
3,156,775	+				+0.7
3,156,775	+		Pf1N1B4_2815	0.27	-2.5
3,156,775	+				-1.6
3,156,775	+		Pf1N1B4_2815	0.27	+0.9
3,156,775	+		Pf1N1B4_2815	0.27	+0.2
3,156,776	-		Pf1N1B4_2815	0.27	+0.7
3,156,776	-		Pf1N1B4_2815	0.27	-0.9
3,156,776	-		Pf1N1B4_2815	0.27	-1.3
3,156,776	-		Pf1N1B4_2815	0.27	-1.3
3,156,776	-		Pf1N1B4_2815	0.27	-2.8
3,156,776	-		Pf1N1B4_2815	0.27	+0.7
3,156,776	-		Pf1N1B4_2815	0.27	-0.0
3,156,776	-		Pf1N1B4_2815	0.27	+0.7
3,156,776	-		Pf1N1B4_2815	0.27	-1.9
3,156,776	-		Pf1N1B4_2815	0.27	-0.3
3,156,776	-		Pf1N1B4_2815	0.27	+0.7
3,156,776	-		Pf1N1B4_2815	0.27	-3.4
3,156,776	-		Pf1N1B4_2815	0.27	+0.7
3,156,778	-				+0.7
3,156,844	+		Pf1N1B4_2815	0.29	-1.4
3,156,845	-		Pf1N1B4_2815	0.29	+0.7
3,156,845	-		Pf1N1B4_2815	0.29	-0.9
3,156,845	-		Pf1N1B4_2815	0.29	-0.9
3,156,845	-		Pf1N1B4_2815	0.29	-0.8
3,156,845	-		Pf1N1B4_2815	0.29	-0.7
3,156,852	+		Pf1N1B4_2815	0.29	+0.7
3,156,852	+		Pf1N1B4_2815	0.29	+0.7
3,156,852	+		Pf1N1B4_2815	0.29	+0.7
3,156,852	+		Pf1N1B4_2815	0.29	-0.4
3,156,852	+		Pf1N1B4_2815	0.29	-2.3
3,156,916	-		Pf1N1B4_2815	0.31	-1.9