Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF984 and GFF985 are separated by 118 nucleotides GFF985 and GFF986 are separated by 12 nucleotides GFF986 and GFF987 overlap by 4 nucleotides
GFF984 - LysR family transcriptional regulator QseA, at 168,418 to 169,326
GFF984
GFF985 - Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 169,445 to 170,617
GFF985
GFF986 - Putative membrane protein, at 170,630 to 171,091
GFF986
GFF987 - FIG00637915: hypothetical protein, at 171,088 to 171,759
GFF987
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.500 kb on + strand at 168.500 kb on + strand at 168.500 kb on + strand at 168.501 kb on - strand at 168.578 kb on + strand, within GFF984 at 168.579 kb on - strand, within GFF984 at 168.657 kb on + strand, within GFF984 at 168.712 kb on - strand, within GFF984 at 168.729 kb on - strand, within GFF984 at 168.765 kb on - strand, within GFF984 at 168.898 kb on + strand, within GFF984 at 168.899 kb on - strand, within GFF984 at 168.899 kb on - strand, within GFF984 at 168.925 kb on + strand, within GFF984 at 168.945 kb on + strand, within GFF984 at 168.954 kb on + strand, within GFF984 at 169.279 kb on + strand at 169.328 kb on + strand at 169.363 kb on + strand at 169.363 kb on + strand at 169.364 kb on - strand at 169.512 kb on + strand at 169.513 kb on - strand at 169.806 kb on - strand, within GFF985 at 170.015 kb on - strand, within GFF985 at 170.531 kb on + strand at 170.532 kb on - strand at 170.690 kb on - strand, within GFF986 at 170.700 kb on + strand, within GFF986 at 170.770 kb on - strand, within GFF986 at 170.783 kb on + strand, within GFF986 at 170.783 kb on + strand, within GFF986 at 170.792 kb on - strand, within GFF986 at 170.857 kb on + strand, within GFF986 at 170.858 kb on - strand, within GFF986 at 170.977 kb on + strand, within GFF986 at 171.058 kb on + strand at 171.058 kb on + strand at 171.058 kb on + strand at 171.059 kb on - strand at 171.073 kb on + strand at 171.074 kb on - strand at 171.074 kb on - strand at 171.074 kb on - strand at 171.077 kb on + strand at 171.078 kb on - strand at 171.078 kb on - strand at 171.255 kb on + strand, within GFF987
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 168,500 + +0.1 168,500 + -0.1 168,500 + +0.1 168,501 - +0.1 168,578 + GFF984 0.18 -0.7 168,579 - GFF984 0.18 +0.4 168,657 + GFF984 0.26 +0.5 168,712 - GFF984 0.32 -0.5 168,729 - GFF984 0.34 -0.2 168,765 - GFF984 0.38 -0.4 168,898 + GFF984 0.53 -0.2 168,899 - GFF984 0.53 -0.6 168,899 - GFF984 0.53 +0.5 168,925 + GFF984 0.56 -0.4 168,945 + GFF984 0.58 +2.1 168,954 + GFF984 0.59 +2.0 169,279 + -0.0 169,328 + +0.2 169,363 + -0.1 169,363 + -0.2 169,364 - +0.2 169,512 + -1.1 169,513 - +0.2 169,806 - GFF985 0.31 -1.8 170,015 - GFF985 0.49 -0.1 170,531 + +0.3 170,532 - -0.0 170,690 - GFF986 0.13 -0.1 170,700 + GFF986 0.15 -0.3 170,770 - GFF986 0.30 +0.3 170,783 + GFF986 0.33 +0.4 170,783 + GFF986 0.33 -0.2 170,792 - GFF986 0.35 +0.3 170,857 + GFF986 0.49 +0.4 170,858 - GFF986 0.49 -0.8 170,977 + GFF986 0.75 +0.4 171,058 + -0.4 171,058 + +0.3 171,058 + +0.2 171,059 - -0.0 171,073 + +0.1 171,074 - +0.2 171,074 - +1.6 171,074 - -0.4 171,077 + +0.5 171,078 - -1.6 171,078 - -0.5 171,255 + GFF987 0.25 -0.4
Or see this region's nucleotide sequence