Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3993 and GFF3994 are separated by 108 nucleotides GFF3994 and GFF3995 are separated by 91 nucleotides GFF3995 and GFF3996 are separated by 73 nucleotides
GFF3993 - hypothetical protein, at 267,727 to 267,858
GFF3993
GFF3994 - FIG00638388: hypothetical protein, at 267,967 to 268,233
GFF3994
GFF3995 - metal-dependent phosphohydrolase, at 268,325 to 269,020
GFF3995
GFF3996 - DNA-cytosine methyltransferase (EC 2.1.1.37), at 269,094 to 270,524
GFF3996
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 267.668 kb on - strand at 268.231 kb on + strand at 268.231 kb on + strand at 268.243 kb on + strand at 268.243 kb on + strand at 268.244 kb on - strand at 268.309 kb on + strand at 268.311 kb on + strand at 268.491 kb on - strand, within GFF3995 at 268.645 kb on + strand, within GFF3995 at 268.776 kb on + strand, within GFF3995 at 268.934 kb on + strand, within GFF3995 at 268.934 kb on + strand, within GFF3995 at 268.934 kb on + strand, within GFF3995 at 269.054 kb on - strand at 269.059 kb on - strand at 269.094 kb on - strand at 269.358 kb on + strand, within GFF3996 at 269.456 kb on + strand, within GFF3996 at 269.457 kb on - strand, within GFF3996 at 269.457 kb on - strand, within GFF3996 at 269.475 kb on + strand, within GFF3996 at 269.478 kb on - strand, within GFF3996 at 269.478 kb on - strand, within GFF3996
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 267,668 - +0.0 268,231 + +0.1 268,231 + -0.2 268,243 + +0.2 268,243 + +0.0 268,244 - -0.5 268,309 + +0.3 268,311 + -0.3 268,491 - GFF3995 0.24 +1.0 268,645 + GFF3995 0.46 +0.1 268,776 + GFF3995 0.65 -0.4 268,934 + GFF3995 0.88 +0.4 268,934 + GFF3995 0.88 +0.5 268,934 + GFF3995 0.88 +0.3 269,054 - +0.4 269,059 - +0.1 269,094 - -0.2 269,358 + GFF3996 0.18 +2.0 269,456 + GFF3996 0.25 +0.4 269,457 - GFF3996 0.25 -3.1 269,457 - GFF3996 0.25 -0.2 269,475 + GFF3996 0.27 +0.2 269,478 - GFF3996 0.27 -0.7 269,478 - GFF3996 0.27 -0.1
Or see this region's nucleotide sequence