Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3948 and GFF3949 are separated by 216 nucleotides GFF3949 and GFF3950 are separated by 597 nucleotides
GFF3948 - Propanediol diffusion facilitator, at 228,532 to 229,326
GFF3948
GFF3949 - Propanediol utilization transcriptional activator, at 229,543 to 230,454
GFF3949
GFF3950 - Cobyrinic acid A,C-diamide synthase, at 231,052 to 232,431
GFF3950
Position (kb) 229
230
231 Strain fitness (log2 ratio) -1
0
1 at 228.782 kb on + strand, within GFF3948 at 228.793 kb on - strand, within GFF3948 at 228.795 kb on + strand, within GFF3948 at 228.838 kb on + strand, within GFF3948 at 228.847 kb on + strand, within GFF3948 at 228.849 kb on + strand, within GFF3948 at 228.850 kb on - strand, within GFF3948 at 228.885 kb on + strand, within GFF3948 at 228.886 kb on - strand, within GFF3948 at 228.933 kb on + strand, within GFF3948 at 228.991 kb on - strand, within GFF3948 at 229.275 kb on - strand at 229.276 kb on + strand at 229.277 kb on - strand at 229.277 kb on - strand at 229.711 kb on - strand, within GFF3949 at 229.711 kb on - strand, within GFF3949 at 229.876 kb on - strand, within GFF3949 at 230.118 kb on + strand, within GFF3949 at 230.210 kb on - strand, within GFF3949 at 230.578 kb on + strand at 230.749 kb on + strand at 230.752 kb on + strand at 230.752 kb on + strand at 230.788 kb on + strand at 230.988 kb on - strand at 231.020 kb on - strand at 231.208 kb on - strand, within GFF3950 at 231.337 kb on + strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.338 kb on - strand, within GFF3950 at 231.365 kb on - strand, within GFF3950
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 228,782 + GFF3948 0.31 +0.1 228,793 - GFF3948 0.33 +0.1 228,795 + GFF3948 0.33 +0.2 228,838 + GFF3948 0.38 -0.0 228,847 + GFF3948 0.40 +0.2 228,849 + GFF3948 0.40 -0.7 228,850 - GFF3948 0.40 +0.3 228,885 + GFF3948 0.44 -0.2 228,886 - GFF3948 0.45 +0.0 228,933 + GFF3948 0.50 -0.4 228,991 - GFF3948 0.58 +0.2 229,275 - +0.4 229,276 + +0.8 229,277 - -1.4 229,277 - +1.2 229,711 - GFF3949 0.18 -0.1 229,711 - GFF3949 0.18 -0.9 229,876 - GFF3949 0.37 +0.1 230,118 + GFF3949 0.63 -0.2 230,210 - GFF3949 0.73 -1.6 230,578 + -0.4 230,749 + -0.5 230,752 + +1.3 230,752 + +0.5 230,788 + -0.3 230,988 - +0.3 231,020 - +0.4 231,208 - GFF3950 0.11 +0.8 231,337 + GFF3950 0.21 -0.5 231,338 - GFF3950 0.21 -0.8 231,338 - GFF3950 0.21 -0.1 231,338 - GFF3950 0.21 -0.1 231,338 - GFF3950 0.21 -0.2 231,365 - GFF3950 0.23 -0.4
Or see this region's nucleotide sequence