Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0652 and Rru_A0653 overlap by 1 nucleotides Rru_A0653 and Rru_A0654 are separated by 47 nucleotides Rru_A0654 and Rru_A0655 are separated by 135 nucleotides Rru_A0655 and Rru_A0656 are separated by 33 nucleotides
Rru_A0652: Rru_A0652 - Pseudouridine synthase, Rsu (NCBI), at 772,842 to 773,723
_A0652
Rru_A0653: Rru_A0653 - hypothetical protein (NCBI), at 773,723 to 774,301
_A0653
Rru_A0654: Rru_A0654 - Multiple antibiotic resistance (MarC)-related proteins (NCBI), at 774,349 to 775,002
_A0654
Rru_A0655: Rru_A0655 - Transcriptional Regulator, AsnC family (NCBI), at 775,138 to 775,728
_A0655
Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472
_A0656
Position (kb) 774
775
776 Strain fitness (log2 ratio) -1
0
1 at 773.475 kb on + strand, within Rru_A0652 at 773.706 kb on - strand at 773.721 kb on + strand at 773.721 kb on + strand at 773.722 kb on - strand at 773.996 kb on - strand, within Rru_A0653 at 774.496 kb on - strand, within Rru_A0654 at 774.497 kb on + strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.845 kb on + strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 775.048 kb on + strand at 775.048 kb on + strand at 775.190 kb on + strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.195 kb on - strand at 775.286 kb on + strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.637 kb on + strand, within Rru_A0655 at 775.639 kb on + strand, within Rru_A0655
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 773,475 + Rru_A0652 0.72 -0.0 773,706 - +1.0 773,721 + +1.4 773,721 + +1.5 773,722 - -0.0 773,996 - Rru_A0653 0.47 -0.0 774,496 - Rru_A0654 0.22 -0.0 774,497 + Rru_A0654 0.23 -0.0 774,498 - Rru_A0654 0.23 -0.0 774,498 - Rru_A0654 0.23 +0.5 774,498 - Rru_A0654 0.23 +0.1 774,498 - Rru_A0654 0.23 -1.6 774,581 + Rru_A0654 0.35 -1.6 774,581 + Rru_A0654 0.35 -0.0 774,581 + Rru_A0654 0.35 -1.0 774,845 + Rru_A0654 0.76 -0.0 774,846 - Rru_A0654 0.76 -1.0 774,846 - Rru_A0654 0.76 +0.7 774,846 - Rru_A0654 0.76 +0.3 775,048 + -1.6 775,048 + -0.0 775,190 + -0.0 775,191 - -1.0 775,191 - -0.0 775,191 - -0.0 775,191 - -0.0 775,191 - -0.0 775,195 - +0.6 775,286 + Rru_A0655 0.25 -0.0 775,287 - Rru_A0655 0.25 -0.0 775,287 - Rru_A0655 0.25 -1.0 775,287 - Rru_A0655 0.25 -0.0 775,637 + Rru_A0655 0.84 +1.0 775,639 + Rru_A0655 0.85 +1.0
Or see this region's nucleotide sequence