Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0642 and Rru_A0643 are separated by 27 nucleotides Rru_A0643 and Rru_A0644 are separated by 83 nucleotides Rru_A0644 and Rru_A0645 are separated by 166 nucleotides
Rru_A0642: Rru_A0642 - Protein of unknown function DUF185 (NCBI), at 763,615 to 764,709
_A0642
Rru_A0643: Rru_A0643 - Protein of unknown function DUF152 (NCBI), at 764,737 to 765,504
_A0643
Rru_A0644: Rru_A0644 - hypothetical protein (NCBI), at 765,588 to 766,616
_A0644
Rru_A0645: Rru_A0645 - Ribose-phosphate pyrophosphokinase (NCBI), at 766,783 to 767,715
_A0645
Position (kb) 765
766
767 Strain fitness (log2 ratio) -1
0
1 at 764.727 kb on - strand at 764.790 kb on + strand at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 765.148 kb on - strand, within Rru_A0643 at 765.192 kb on + strand, within Rru_A0643 at 765.232 kb on + strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.433 kb on + strand at 765.902 kb on - strand, within Rru_A0644 at 765.902 kb on - strand, within Rru_A0644 at 766.535 kb on - strand at 766.614 kb on + strand at 766.649 kb on + strand at 766.764 kb on + strand at 767.509 kb on + strand, within Rru_A0645
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 764,727 - -0.0 764,790 + -0.0 764,821 + Rru_A0643 0.11 -1.6 764,821 + Rru_A0643 0.11 -0.0 764,821 + Rru_A0643 0.11 -0.0 764,821 + Rru_A0643 0.11 -0.0 764,821 + Rru_A0643 0.11 -0.0 764,822 - Rru_A0643 0.11 -0.0 764,822 - Rru_A0643 0.11 -0.0 764,822 - Rru_A0643 0.11 -0.0 764,822 - Rru_A0643 0.11 -1.0 764,822 - Rru_A0643 0.11 -0.0 765,148 - Rru_A0643 0.54 -0.0 765,192 + Rru_A0643 0.59 -0.0 765,232 + Rru_A0643 0.64 +1.6 765,233 - Rru_A0643 0.65 -0.0 765,233 - Rru_A0643 0.65 -0.0 765,233 - Rru_A0643 0.65 -0.0 765,233 - Rru_A0643 0.65 -0.0 765,233 - Rru_A0643 0.65 -0.0 765,344 - Rru_A0643 0.79 -1.6 765,344 - Rru_A0643 0.79 -0.0 765,433 + -0.0 765,902 - Rru_A0644 0.31 -1.0 765,902 - Rru_A0644 0.31 -0.0 766,535 - -1.6 766,614 + +0.7 766,649 + +1.0 766,764 + +0.3 767,509 + Rru_A0645 0.78 +1.2
Or see this region's nucleotide sequence