Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3015

Experiment: 9 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3014 and DvMF_3015 are separated by 228 nucleotidesDvMF_3015 and DvMF_3016 overlap by 8 nucleotides DvMF_3014: DvMF_3014 - hypothetical protein (RefSeq), at 3,803,116 to 3,803,847 _3014 DvMF_3015: DvMF_3015 - aminotransferase class I and II (RefSeq), at 3,804,076 to 3,805,347 _3015 DvMF_3016: DvMF_3016 - glycosyl transferase group 1 (RefSeq), at 3,805,340 to 3,806,461 _3016 Position (kb) 3804 3805 3806Strain fitness (log2 ratio) -1 0 1at 3803.163 kb on - strandat 3803.423 kb on + strand, within DvMF_3014at 3803.493 kb on - strand, within DvMF_3014at 3803.817 kb on + strandat 3804.023 kb on + strandat 3804.107 kb on + strandat 3804.362 kb on + strand, within DvMF_3015at 3804.688 kb on + strand, within DvMF_3015at 3804.779 kb on - strand, within DvMF_3015at 3804.892 kb on - strand, within DvMF_3015at 3804.914 kb on + strand, within DvMF_3015at 3805.256 kb on + strandat 3805.490 kb on - strand, within DvMF_3016at 3805.694 kb on - strand, within DvMF_3016at 3805.737 kb on - strand, within DvMF_3016at 3805.804 kb on - strand, within DvMF_3016at 3805.857 kb on - strand, within DvMF_3016at 3805.870 kb on + strand, within DvMF_3016at 3805.892 kb on + strand, within DvMF_3016at 3805.942 kb on - strand, within DvMF_3016at 3806.139 kb on - strand, within DvMF_3016at 3806.258 kb on - strand, within DvMF_3016at 3806.304 kb on + strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.335 kb on + strand, within DvMF_3016at 3806.343 kb on - strand, within DvMF_3016

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 37C
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3,803,163 - +0.3
3,803,423 + DvMF_3014 0.42 +0.0
3,803,493 - DvMF_3014 0.52 -0.5
3,803,817 + +0.2
3,804,023 + +0.0
3,804,107 + -0.4
3,804,362 + DvMF_3015 0.22 -0.2
3,804,688 + DvMF_3015 0.48 -0.2
3,804,779 - DvMF_3015 0.55 -1.6
3,804,892 - DvMF_3015 0.64 +0.4
3,804,914 + DvMF_3015 0.66 +0.0
3,805,256 + +0.9
3,805,490 - DvMF_3016 0.13 +0.4
3,805,694 - DvMF_3016 0.32 +0.5
3,805,737 - DvMF_3016 0.35 +0.0
3,805,804 - DvMF_3016 0.41 -0.3
3,805,857 - DvMF_3016 0.46 -1.6
3,805,870 + DvMF_3016 0.47 -0.2
3,805,892 + DvMF_3016 0.49 +0.6
3,805,942 - DvMF_3016 0.54 +1.5
3,806,139 - DvMF_3016 0.71 +1.6
3,806,258 - DvMF_3016 0.82 -1.6
3,806,304 + DvMF_3016 0.86 +0.3
3,806,312 - DvMF_3016 0.87 +0.2
3,806,312 - DvMF_3016 0.87 -1.3
3,806,335 + DvMF_3016 0.89 -0.4
3,806,343 - DvMF_3016 0.89 +0.6

Or see this region's nucleotide sequence