Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07845 and AO353_07850 are separated by 195 nucleotides AO353_07850 and AO353_07855 are separated by 192 nucleotides
AO353_07845: AO353_07845 - EmrB/QacA subfamily drug resistance transporter, at 1,730,229 to 1,731,656
_07845
AO353_07850: AO353_07850 - ATP-dependent RNA helicase, at 1,731,852 to 1,733,237
_07850
AO353_07855: AO353_07855 - hypothetical protein, at 1,733,430 to 1,734,608
_07855
Position (kb)
1731
1732
1733
1734 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1731.107 kb on - strand, within AO353_07845 at 1731.123 kb on + strand, within AO353_07845 at 1731.124 kb on - strand, within AO353_07845 at 1731.300 kb on + strand, within AO353_07845 at 1731.368 kb on + strand, within AO353_07845 at 1731.369 kb on - strand, within AO353_07845 at 1731.544 kb on + strand at 1731.544 kb on + strand at 1731.544 kb on + strand at 1731.545 kb on - strand at 1731.545 kb on - strand at 1731.545 kb on - strand at 1731.654 kb on + strand at 1731.654 kb on + strand at 1731.655 kb on - strand at 1731.655 kb on - strand at 1731.655 kb on - strand at 1731.655 kb on - strand at 1731.662 kb on - strand at 1731.719 kb on - strand at 1731.719 kb on - strand at 1731.758 kb on + strand at 1731.759 kb on - strand at 1731.759 kb on - strand at 1731.759 kb on - strand at 1731.772 kb on - strand at 1731.816 kb on + strand at 1731.816 kb on + strand at 1731.816 kb on + strand at 1731.816 kb on + strand at 1731.875 kb on + strand at 1731.876 kb on - strand at 1731.876 kb on - strand at 1731.876 kb on - strand at 1731.876 kb on - strand at 1731.878 kb on + strand at 1731.878 kb on + strand at 1731.879 kb on - strand at 1731.879 kb on - strand at 1732.350 kb on + strand, within AO353_07850 at 1732.350 kb on + strand, within AO353_07850 at 1732.351 kb on - strand, within AO353_07850 at 1732.351 kb on - strand, within AO353_07850 at 1732.351 kb on - strand, within AO353_07850 at 1732.419 kb on + strand, within AO353_07850 at 1732.733 kb on + strand, within AO353_07850 at 1732.734 kb on - strand, within AO353_07850 at 1732.734 kb on - strand, within AO353_07850 at 1732.734 kb on - strand, within AO353_07850 at 1733.039 kb on + strand, within AO353_07850 at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.142 kb on + strand at 1733.143 kb on - strand at 1733.143 kb on - strand at 1733.143 kb on - strand at 1733.143 kb on - strand at 1733.143 kb on - strand at 1733.343 kb on + strand at 1733.343 kb on + strand at 1733.343 kb on + strand at 1733.352 kb on + strand at 1733.353 kb on - strand at 1733.407 kb on + strand at 1733.439 kb on - strand at 1733.595 kb on + strand, within AO353_07855 at 1733.596 kb on - strand, within AO353_07855 at 1733.596 kb on - strand, within AO353_07855 at 1733.596 kb on - strand, within AO353_07855 at 1733.596 kb on - strand, within AO353_07855 at 1733.596 kb on - strand, within AO353_07855 at 1733.639 kb on + strand, within AO353_07855 at 1733.640 kb on - strand, within AO353_07855 at 1733.659 kb on - strand, within AO353_07855 at 1733.660 kb on + strand, within AO353_07855 at 1733.706 kb on + strand, within AO353_07855 at 1733.707 kb on - strand, within AO353_07855 at 1733.731 kb on + strand, within AO353_07855 at 1733.731 kb on + strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.732 kb on - strand, within AO353_07855 at 1733.956 kb on + strand, within AO353_07855 at 1733.956 kb on + strand, within AO353_07855 at 1733.956 kb on + strand, within AO353_07855 at 1733.957 kb on - strand, within AO353_07855 at 1734.056 kb on + strand, within AO353_07855 at 1734.057 kb on - strand, within AO353_07855
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 1,731,107 - AO353_07845 0.61 -0.1 1,731,123 + AO353_07845 0.63 -0.5 1,731,124 - AO353_07845 0.63 +0.2 1,731,300 + AO353_07845 0.75 -1.8 1,731,368 + AO353_07845 0.80 -0.2 1,731,369 - AO353_07845 0.80 -0.2 1,731,544 + +0.1 1,731,544 + +0.2 1,731,544 + +0.2 1,731,545 - -0.6 1,731,545 - -0.5 1,731,545 - +0.7 1,731,654 + -1.0 1,731,654 + +2.2 1,731,655 - -0.9 1,731,655 - +0.2 1,731,655 - +1.4 1,731,655 - -1.7 1,731,662 - +0.0 1,731,719 - +0.3 1,731,719 - +0.2 1,731,758 + -0.0 1,731,759 - +0.7 1,731,759 - +0.8 1,731,759 - +2.7 1,731,772 - +0.5 1,731,816 + -0.3 1,731,816 + +1.7 1,731,816 + -0.0 1,731,816 + -0.3 1,731,875 + -1.8 1,731,876 - -1.4 1,731,876 - -3.4 1,731,876 - -1.9 1,731,876 - -2.1 1,731,878 + -0.9 1,731,878 + -2.4 1,731,879 - -1.2 1,731,879 - -2.3 1,732,350 + AO353_07850 0.36 -1.1 1,732,350 + AO353_07850 0.36 -2.5 1,732,351 - AO353_07850 0.36 -1.6 1,732,351 - AO353_07850 0.36 -2.7 1,732,351 - AO353_07850 0.36 -0.9 1,732,419 + AO353_07850 0.41 -0.9 1,732,733 + AO353_07850 0.64 -3.2 1,732,734 - AO353_07850 0.64 -2.2 1,732,734 - AO353_07850 0.64 -1.2 1,732,734 - AO353_07850 0.64 -3.3 1,733,039 + AO353_07850 0.86 -2.4 1,733,142 + -2.1 1,733,142 + -2.9 1,733,142 + -0.9 1,733,142 + -0.9 1,733,142 + -3.4 1,733,142 + -0.3 1,733,142 + -3.1 1,733,142 + -0.3 1,733,143 - -1.9 1,733,143 - -3.5 1,733,143 - -1.2 1,733,143 - -0.6 1,733,143 - -2.0 1,733,343 + +0.1 1,733,343 + +0.4 1,733,343 + +0.7 1,733,352 + +1.5 1,733,353 - +0.0 1,733,407 + -2.0 1,733,439 - +0.8 1,733,595 + AO353_07855 0.14 +2.0 1,733,596 - AO353_07855 0.14 -0.6 1,733,596 - AO353_07855 0.14 +1.6 1,733,596 - AO353_07855 0.14 -0.4 1,733,596 - AO353_07855 0.14 -0.5 1,733,596 - AO353_07855 0.14 +0.7 1,733,639 + AO353_07855 0.18 +0.0 1,733,640 - AO353_07855 0.18 +0.4 1,733,659 - AO353_07855 0.19 -0.6 1,733,660 + AO353_07855 0.20 +0.5 1,733,706 + AO353_07855 0.23 -0.3 1,733,707 - AO353_07855 0.23 -1.3 1,733,731 + AO353_07855 0.26 +0.6 1,733,731 + AO353_07855 0.26 +2.1 1,733,732 - AO353_07855 0.26 -1.2 1,733,732 - AO353_07855 0.26 +0.3 1,733,732 - AO353_07855 0.26 -0.0 1,733,732 - AO353_07855 0.26 +0.6 1,733,732 - AO353_07855 0.26 +0.3 1,733,732 - AO353_07855 0.26 -1.2 1,733,732 - AO353_07855 0.26 -0.8 1,733,956 + AO353_07855 0.45 +2.1 1,733,956 + AO353_07855 0.45 -0.6 1,733,956 + AO353_07855 0.45 -1.6 1,733,957 - AO353_07855 0.45 +0.4 1,734,056 + AO353_07855 0.53 +0.7 1,734,057 - AO353_07855 0.53 -0.1
Or see this region's nucleotide sequence