Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF792

Experiment: Br60_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF792 and GFF793 are separated by 400 nucleotides GFF792 - hypothetical protein, at 142,744 to 142,857 GFF792 GFF793 - hypothetical protein, at 143,258 to 143,371 GFF793 Position (kb) 142 143Strain fitness (log2 ratio) -1 0 1 2 3at 141.783 kb on - strandat 141.783 kb on - strandat 141.783 kb on - strandat 141.817 kb on + strandat 141.913 kb on + strandat 141.926 kb on + strandat 142.027 kb on - strandat 142.029 kb on - strandat 142.037 kb on - strandat 142.037 kb on - strandat 142.098 kb on + strandat 142.231 kb on - strandat 142.243 kb on + strandat 142.244 kb on - strandat 142.350 kb on - strandat 142.351 kb on + strandat 142.351 kb on + strandat 142.351 kb on + strandat 142.382 kb on + strandat 142.426 kb on - strandat 142.483 kb on - strandat 142.543 kb on + strandat 142.544 kb on - strandat 142.647 kb on + strandat 142.712 kb on + strandat 142.825 kb on - strand, within GFF792at 143.281 kb on - strand, within GFF793at 143.431 kb on - strandat 143.481 kb on - strandat 143.518 kb on + strandat 143.518 kb on + strandat 143.519 kb on - strandat 143.589 kb on + strandat 143.631 kb on - strandat 143.683 kb on + strandat 143.691 kb on + strandat 143.793 kb on + strandat 143.806 kb on - strandat 143.814 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
remove
141,783 - +3.6
141,783 - +0.7
141,783 - +2.0
141,817 + +1.0
141,913 + +0.9
141,926 + +0.4
142,027 - -1.0
142,029 - +2.8
142,037 - +2.5
142,037 - +1.2
142,098 + -1.1
142,231 - +1.6
142,243 + +1.2
142,244 - +1.4
142,350 - +2.8
142,351 + +0.3
142,351 + +0.6
142,351 + +0.8
142,382 + -0.5
142,426 - +2.6
142,483 - +1.6
142,543 + +0.3
142,544 - +0.2
142,647 + -0.9
142,712 + +0.4
142,825 - GFF792 0.71 +2.6
143,281 - GFF793 0.20 +1.1
143,431 - +3.2
143,481 - +0.9
143,518 + +0.4
143,518 + +1.9
143,519 - +1.3
143,589 + -0.1
143,631 - +2.4
143,683 + +1.6
143,691 + +1.6
143,793 + +1.7
143,806 - +2.6
143,814 - +2.9

Or see this region's nucleotide sequence