Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3791 and GFF3792 overlap by 7 nucleotides GFF3792 and GFF3793 are separated by 204 nucleotides GFF3793 and GFF3794 are separated by 2 nucleotides
GFF3791 - Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2), at 60,989 to 62,224
GFF3791
GFF3792 - Pyridine nucleotide-disulphide oxidoreductase family protein, at 62,218 to 63,459
GFF3792
GFF3793 - FIG00638799: hypothetical protein, at 63,664 to 63,903
GFF3793
GFF3794 - SanA protein, at 63,906 to 64,625
GFF3794
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 61.259 kb on - strand, within GFF3791 at 61.289 kb on + strand, within GFF3791 at 61.318 kb on - strand, within GFF3791 at 61.347 kb on - strand, within GFF3791 at 61.362 kb on + strand, within GFF3791 at 61.370 kb on - strand, within GFF3791 at 61.389 kb on - strand, within GFF3791 at 61.501 kb on + strand, within GFF3791 at 61.604 kb on - strand, within GFF3791 at 61.681 kb on + strand, within GFF3791 at 61.778 kb on + strand, within GFF3791 at 62.186 kb on - strand at 62.665 kb on + strand, within GFF3792 at 62.687 kb on - strand, within GFF3792 at 63.022 kb on + strand, within GFF3792 at 63.199 kb on - strand, within GFF3792 at 63.895 kb on + strand at 64.161 kb on - strand, within GFF3794 at 64.202 kb on + strand, within GFF3794 at 64.339 kb on + strand, within GFF3794 at 64.386 kb on - strand, within GFF3794 at 64.430 kb on - strand, within GFF3794 at 64.459 kb on + strand, within GFF3794
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 61,259 - GFF3791 0.22 -1.4 61,289 + GFF3791 0.24 -0.1 61,318 - GFF3791 0.27 -1.4 61,347 - GFF3791 0.29 +0.7 61,362 + GFF3791 0.30 -2.7 61,370 - GFF3791 0.31 -0.6 61,389 - GFF3791 0.32 +1.5 61,501 + GFF3791 0.41 +0.2 61,604 - GFF3791 0.50 +0.2 61,681 + GFF3791 0.56 +0.1 61,778 + GFF3791 0.64 -0.5 62,186 - +0.0 62,665 + GFF3792 0.36 +2.8 62,687 - GFF3792 0.38 +0.2 63,022 + GFF3792 0.65 -0.6 63,199 - GFF3792 0.79 +0.7 63,895 + -0.2 64,161 - GFF3794 0.35 -0.0 64,202 + GFF3794 0.41 +0.9 64,339 + GFF3794 0.60 -0.6 64,386 - GFF3794 0.67 -1.3 64,430 - GFF3794 0.73 +0.1 64,459 + GFF3794 0.77 -0.4
Or see this region's nucleotide sequence