Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2301 and Dsui_2302 are separated by 73 nucleotides Dsui_2302 and Dsui_2303 are separated by 39 nucleotides Dsui_2303 and Dsui_2304 are separated by 29 nucleotides
Dsui_2301: Dsui_2301 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,456,044 to 2,458,458
_2301
Dsui_2302: Dsui_2302 - acyl-CoA dehydrogenase, at 2,458,532 to 2,460,325
_2302
Dsui_2303: Dsui_2303 - putative membrane protein, at 2,460,365 to 2,461,030
_2303
Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989
_2304
Position (kb)
2458
2459
2460
2461 Strain fitness (log2 ratio)
-2
-1
0
1 at 2457.578 kb on - strand at 2457.725 kb on + strand at 2457.755 kb on + strand, within Dsui_2301 at 2457.765 kb on + strand, within Dsui_2301 at 2457.768 kb on - strand, within Dsui_2301 at 2457.772 kb on + strand, within Dsui_2301 at 2457.794 kb on - strand, within Dsui_2301 at 2457.829 kb on + strand, within Dsui_2301 at 2457.836 kb on + strand at 2457.975 kb on + strand at 2457.983 kb on - strand, within Dsui_2301 at 2458.022 kb on + strand, within Dsui_2301 at 2458.022 kb on + strand, within Dsui_2301 at 2458.029 kb on - strand, within Dsui_2301 at 2458.113 kb on + strand, within Dsui_2301 at 2458.157 kb on + strand, within Dsui_2301 at 2458.157 kb on + strand, within Dsui_2301 at 2458.178 kb on - strand, within Dsui_2301 at 2458.209 kb on + strand at 2458.236 kb on - strand at 2458.346 kb on - strand at 2458.437 kb on - strand at 2458.499 kb on - strand at 2458.504 kb on - strand at 2458.623 kb on + strand at 2458.779 kb on + strand, within Dsui_2302 at 2458.787 kb on - strand, within Dsui_2302 at 2459.119 kb on + strand, within Dsui_2302 at 2459.132 kb on - strand, within Dsui_2302 at 2459.135 kb on - strand, within Dsui_2302 at 2459.168 kb on - strand, within Dsui_2302 at 2459.245 kb on - strand, within Dsui_2302 at 2459.383 kb on + strand, within Dsui_2302 at 2459.412 kb on - strand, within Dsui_2302 at 2459.654 kb on - strand, within Dsui_2302 at 2459.712 kb on + strand, within Dsui_2302 at 2459.769 kb on + strand, within Dsui_2302 at 2459.775 kb on + strand, within Dsui_2302 at 2459.844 kb on + strand, within Dsui_2302 at 2459.844 kb on - strand, within Dsui_2302 at 2459.857 kb on - strand, within Dsui_2302 at 2459.947 kb on + strand, within Dsui_2302 at 2459.964 kb on + strand, within Dsui_2302 at 2460.020 kb on - strand, within Dsui_2302 at 2460.039 kb on + strand, within Dsui_2302 at 2460.052 kb on - strand, within Dsui_2302 at 2460.127 kb on + strand, within Dsui_2302 at 2460.184 kb on + strand at 2460.193 kb on - strand at 2460.193 kb on - strand at 2460.232 kb on - strand at 2460.259 kb on + strand at 2460.267 kb on - strand at 2460.267 kb on - strand at 2460.322 kb on - strand at 2460.342 kb on + strand at 2460.407 kb on - strand at 2460.424 kb on + strand at 2460.636 kb on - strand, within Dsui_2303 at 2460.687 kb on + strand, within Dsui_2303 at 2460.687 kb on + strand, within Dsui_2303 at 2460.776 kb on + strand, within Dsui_2303 at 2460.781 kb on + strand, within Dsui_2303 at 2460.908 kb on - strand, within Dsui_2303 at 2460.992 kb on + strand at 2461.000 kb on - strand at 2461.000 kb on - strand at 2461.005 kb on - strand at 2461.057 kb on + strand at 2461.177 kb on - strand, within Dsui_2304
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,457,578 - +0.8 2,457,725 + +0.8 2,457,755 + Dsui_2301 0.71 -0.2 2,457,765 + Dsui_2301 0.71 +0.8 2,457,768 - Dsui_2301 0.71 +0.8 2,457,772 + Dsui_2301 0.72 +0.8 2,457,794 - Dsui_2301 0.72 -1.2 2,457,829 + Dsui_2301 0.74 -0.8 2,457,836 + -0.2 2,457,975 + +0.8 2,457,983 - Dsui_2301 0.80 -0.8 2,458,022 + Dsui_2301 0.82 -2.2 2,458,022 + Dsui_2301 0.82 -0.2 2,458,029 - Dsui_2301 0.82 -0.8 2,458,113 + Dsui_2301 0.86 +0.8 2,458,157 + Dsui_2301 0.87 -0.2 2,458,157 + Dsui_2301 0.87 -1.8 2,458,178 - Dsui_2301 0.88 +0.8 2,458,209 + -0.2 2,458,236 - +0.8 2,458,346 - +0.8 2,458,437 - -1.8 2,458,499 - +0.3 2,458,504 - -0.1 2,458,623 + +0.8 2,458,779 + Dsui_2302 0.14 -0.8 2,458,787 - Dsui_2302 0.14 -0.3 2,459,119 + Dsui_2302 0.33 +0.8 2,459,132 - Dsui_2302 0.33 -0.9 2,459,135 - Dsui_2302 0.34 -0.2 2,459,168 - Dsui_2302 0.35 +0.8 2,459,245 - Dsui_2302 0.40 -0.1 2,459,383 + Dsui_2302 0.47 -1.2 2,459,412 - Dsui_2302 0.49 -0.3 2,459,654 - Dsui_2302 0.63 -0.5 2,459,712 + Dsui_2302 0.66 -0.8 2,459,769 + Dsui_2302 0.69 +0.8 2,459,775 + Dsui_2302 0.69 -0.8 2,459,844 + Dsui_2302 0.73 +0.8 2,459,844 - Dsui_2302 0.73 -0.6 2,459,857 - Dsui_2302 0.74 -0.2 2,459,947 + Dsui_2302 0.79 -0.2 2,459,964 + Dsui_2302 0.80 -0.8 2,460,020 - Dsui_2302 0.83 -0.6 2,460,039 + Dsui_2302 0.84 -0.2 2,460,052 - Dsui_2302 0.85 -0.4 2,460,127 + Dsui_2302 0.89 -1.2 2,460,184 + -0.8 2,460,193 - -0.3 2,460,193 - +0.8 2,460,232 - -0.6 2,460,259 + +0.8 2,460,267 - -0.2 2,460,267 - -0.8 2,460,322 - -0.3 2,460,342 + +0.8 2,460,407 - -0.1 2,460,424 + +0.8 2,460,636 - Dsui_2303 0.41 -0.9 2,460,687 + Dsui_2303 0.48 +0.8 2,460,687 + Dsui_2303 0.48 -0.2 2,460,776 + Dsui_2303 0.62 -0.2 2,460,781 + Dsui_2303 0.62 -0.8 2,460,908 - Dsui_2303 0.82 -0.2 2,460,992 + -1.8 2,461,000 - +0.1 2,461,000 - +0.0 2,461,005 - -0.4 2,461,057 + +0.8 2,461,177 - Dsui_2304 0.13 -0.3
Or see this region's nucleotide sequence