Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1158 and Dsui_1159 are separated by 14 nucleotides Dsui_1159 and Dsui_1160 are separated by 79 nucleotides Dsui_1160 and Dsui_1161 are separated by 2 nucleotides Dsui_1161 and Dsui_1162 are separated by 9 nucleotides
Dsui_1158: Dsui_1158 - hydrogenase expression/formation protein HypE, at 1,213,970 to 1,215,016
_1158
Dsui_1159: Dsui_1159 - hydrogenase expression/formation protein HypD, at 1,215,031 to 1,216,161
_1159
Dsui_1160: Dsui_1160 - hydrogenase assembly chaperone HypC/HupF, at 1,216,241 to 1,216,486
_1160
Dsui_1161: Dsui_1161 - transglutaminase-like enzyme, predicted cysteine protease, at 1,216,489 to 1,217,133
_1161
Dsui_1162: Dsui_1162 - (NiFe) hydrogenase maturation protein HypF, at 1,217,143 to 1,219,482
_1162
Position (kb)
1215
1216
1217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1214.062 kb on - strand at 1214.156 kb on + strand, within Dsui_1158 at 1214.183 kb on + strand, within Dsui_1158 at 1214.183 kb on + strand at 1214.306 kb on - strand, within Dsui_1158 at 1214.308 kb on + strand, within Dsui_1158 at 1214.352 kb on - strand, within Dsui_1158 at 1214.357 kb on - strand, within Dsui_1158 at 1214.357 kb on - strand, within Dsui_1158 at 1214.571 kb on + strand, within Dsui_1158 at 1214.571 kb on + strand, within Dsui_1158 at 1214.571 kb on + strand, within Dsui_1158 at 1214.571 kb on + strand, within Dsui_1158 at 1214.579 kb on - strand, within Dsui_1158 at 1214.579 kb on - strand, within Dsui_1158 at 1214.579 kb on - strand, within Dsui_1158 at 1214.683 kb on - strand, within Dsui_1158 at 1214.855 kb on + strand, within Dsui_1158 at 1214.863 kb on - strand, within Dsui_1158 at 1214.960 kb on + strand at 1214.986 kb on + strand at 1215.042 kb on - strand at 1215.099 kb on + strand at 1215.134 kb on + strand at 1215.142 kb on - strand at 1215.177 kb on + strand, within Dsui_1159 at 1215.190 kb on - strand, within Dsui_1159 at 1215.279 kb on + strand, within Dsui_1159 at 1215.313 kb on + strand, within Dsui_1159 at 1215.380 kb on - strand, within Dsui_1159 at 1215.497 kb on - strand, within Dsui_1159 at 1215.550 kb on + strand, within Dsui_1159 at 1215.653 kb on - strand, within Dsui_1159 at 1215.680 kb on + strand at 1215.694 kb on - strand, within Dsui_1159 at 1215.802 kb on + strand at 1215.810 kb on - strand, within Dsui_1159 at 1215.881 kb on - strand, within Dsui_1159 at 1215.900 kb on + strand, within Dsui_1159 at 1215.901 kb on - strand, within Dsui_1159 at 1216.049 kb on - strand at 1216.093 kb on - strand at 1216.240 kb on - strand at 1216.240 kb on - strand at 1216.247 kb on - strand at 1216.268 kb on + strand, within Dsui_1160 at 1216.326 kb on + strand, within Dsui_1160 at 1216.334 kb on - strand, within Dsui_1160 at 1216.337 kb on + strand, within Dsui_1160 at 1216.386 kb on + strand at 1216.390 kb on + strand, within Dsui_1160 at 1216.487 kb on + strand at 1216.495 kb on - strand at 1216.552 kb on + strand at 1216.600 kb on - strand, within Dsui_1161 at 1216.659 kb on - strand, within Dsui_1161 at 1216.659 kb on - strand, within Dsui_1161 at 1216.703 kb on - strand, within Dsui_1161 at 1216.740 kb on - strand, within Dsui_1161 at 1216.786 kb on - strand, within Dsui_1161 at 1216.909 kb on - strand, within Dsui_1161 at 1216.924 kb on + strand at 1217.032 kb on + strand, within Dsui_1161
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,214,062 - -1.0 1,214,156 + Dsui_1158 0.18 -0.6 1,214,183 + Dsui_1158 0.20 +0.4 1,214,183 + +0.4 1,214,306 - Dsui_1158 0.32 -1.3 1,214,308 + Dsui_1158 0.32 -1.6 1,214,352 - Dsui_1158 0.36 +0.4 1,214,357 - Dsui_1158 0.37 -2.9 1,214,357 - Dsui_1158 0.37 -0.6 1,214,571 + Dsui_1158 0.57 +0.4 1,214,571 + Dsui_1158 0.57 -0.6 1,214,571 + Dsui_1158 0.57 -1.2 1,214,571 + Dsui_1158 0.57 -1.9 1,214,579 - Dsui_1158 0.58 -0.3 1,214,579 - Dsui_1158 0.58 -2.2 1,214,579 - Dsui_1158 0.58 -1.7 1,214,683 - Dsui_1158 0.68 +2.0 1,214,855 + Dsui_1158 0.85 -1.2 1,214,863 - Dsui_1158 0.85 -0.7 1,214,960 + -0.6 1,214,986 + -0.6 1,215,042 - -2.2 1,215,099 + -0.1 1,215,134 + -2.2 1,215,142 - -0.3 1,215,177 + Dsui_1159 0.13 +0.4 1,215,190 - Dsui_1159 0.14 -1.9 1,215,279 + Dsui_1159 0.22 -1.6 1,215,313 + Dsui_1159 0.25 -0.6 1,215,380 - Dsui_1159 0.31 -1.0 1,215,497 - Dsui_1159 0.41 -1.8 1,215,550 + Dsui_1159 0.46 +0.4 1,215,653 - Dsui_1159 0.55 -3.1 1,215,680 + +0.4 1,215,694 - Dsui_1159 0.59 -0.6 1,215,802 + +0.4 1,215,810 - Dsui_1159 0.69 -2.2 1,215,881 - Dsui_1159 0.75 -1.8 1,215,900 + Dsui_1159 0.77 -0.6 1,215,901 - Dsui_1159 0.77 -1.5 1,216,049 - -1.4 1,216,093 - +0.0 1,216,240 - -0.6 1,216,240 - -0.6 1,216,247 - -0.4 1,216,268 + Dsui_1160 0.11 +0.4 1,216,326 + Dsui_1160 0.35 -1.2 1,216,334 - Dsui_1160 0.38 -0.6 1,216,337 + Dsui_1160 0.39 -1.9 1,216,386 + +0.4 1,216,390 + Dsui_1160 0.61 -1.6 1,216,487 + +0.4 1,216,495 - -2.2 1,216,552 + +0.4 1,216,600 - Dsui_1161 0.17 -1.0 1,216,659 - Dsui_1161 0.26 -0.8 1,216,659 - Dsui_1161 0.26 -1.6 1,216,703 - Dsui_1161 0.33 -1.2 1,216,740 - Dsui_1161 0.39 -1.7 1,216,786 - Dsui_1161 0.46 -1.2 1,216,909 - Dsui_1161 0.65 -0.8 1,216,924 + -0.6 1,217,032 + Dsui_1161 0.84 -0.6
Or see this region's nucleotide sequence