Strain Fitness in Dechlorosoma suillum PS around Dsui_1159

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1158 and Dsui_1159 are separated by 14 nucleotidesDsui_1159 and Dsui_1160 are separated by 79 nucleotidesDsui_1160 and Dsui_1161 are separated by 2 nucleotidesDsui_1161 and Dsui_1162 are separated by 9 nucleotides Dsui_1158: Dsui_1158 - hydrogenase expression/formation protein HypE, at 1,213,970 to 1,215,016 _1158 Dsui_1159: Dsui_1159 - hydrogenase expression/formation protein HypD, at 1,215,031 to 1,216,161 _1159 Dsui_1160: Dsui_1160 - hydrogenase assembly chaperone HypC/HupF, at 1,216,241 to 1,216,486 _1160 Dsui_1161: Dsui_1161 - transglutaminase-like enzyme, predicted cysteine protease, at 1,216,489 to 1,217,133 _1161 Dsui_1162: Dsui_1162 - (NiFe) hydrogenase maturation protein HypF, at 1,217,143 to 1,219,482 _1162 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1214.062 kb on - strandat 1214.156 kb on + strand, within Dsui_1158at 1214.183 kb on + strand, within Dsui_1158at 1214.183 kb on + strandat 1214.306 kb on - strand, within Dsui_1158at 1214.308 kb on + strand, within Dsui_1158at 1214.352 kb on - strand, within Dsui_1158at 1214.357 kb on - strand, within Dsui_1158at 1214.357 kb on - strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.571 kb on + strand, within Dsui_1158at 1214.579 kb on - strand, within Dsui_1158at 1214.579 kb on - strand, within Dsui_1158at 1214.579 kb on - strand, within Dsui_1158at 1214.683 kb on - strand, within Dsui_1158at 1214.855 kb on + strand, within Dsui_1158at 1214.863 kb on - strand, within Dsui_1158at 1214.960 kb on + strandat 1214.986 kb on + strandat 1215.042 kb on - strandat 1215.099 kb on + strandat 1215.134 kb on + strandat 1215.142 kb on - strandat 1215.177 kb on + strand, within Dsui_1159at 1215.190 kb on - strand, within Dsui_1159at 1215.279 kb on + strand, within Dsui_1159at 1215.313 kb on + strand, within Dsui_1159at 1215.380 kb on - strand, within Dsui_1159at 1215.497 kb on - strand, within Dsui_1159at 1215.550 kb on + strand, within Dsui_1159at 1215.653 kb on - strand, within Dsui_1159at 1215.680 kb on + strandat 1215.694 kb on - strand, within Dsui_1159at 1215.802 kb on + strandat 1215.810 kb on - strand, within Dsui_1159at 1215.881 kb on - strand, within Dsui_1159at 1215.900 kb on + strand, within Dsui_1159at 1215.901 kb on - strand, within Dsui_1159at 1216.049 kb on - strandat 1216.093 kb on - strandat 1216.240 kb on - strandat 1216.240 kb on - strandat 1216.247 kb on - strandat 1216.268 kb on + strand, within Dsui_1160at 1216.326 kb on + strand, within Dsui_1160at 1216.334 kb on - strand, within Dsui_1160at 1216.337 kb on + strand, within Dsui_1160at 1216.386 kb on + strandat 1216.390 kb on + strand, within Dsui_1160at 1216.487 kb on + strandat 1216.495 kb on - strandat 1216.552 kb on + strandat 1216.600 kb on - strand, within Dsui_1161at 1216.659 kb on - strand, within Dsui_1161at 1216.659 kb on - strand, within Dsui_1161at 1216.703 kb on - strand, within Dsui_1161at 1216.740 kb on - strand, within Dsui_1161at 1216.786 kb on - strand, within Dsui_1161at 1216.909 kb on - strand, within Dsui_1161at 1216.924 kb on + strandat 1217.032 kb on + strand, within Dsui_1161

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,214,062 - -1.0
1,214,156 + Dsui_1158 0.18 -0.6
1,214,183 + Dsui_1158 0.20 +0.4
1,214,183 + +0.4
1,214,306 - Dsui_1158 0.32 -1.3
1,214,308 + Dsui_1158 0.32 -1.6
1,214,352 - Dsui_1158 0.36 +0.4
1,214,357 - Dsui_1158 0.37 -2.9
1,214,357 - Dsui_1158 0.37 -0.6
1,214,571 + Dsui_1158 0.57 +0.4
1,214,571 + Dsui_1158 0.57 -0.6
1,214,571 + Dsui_1158 0.57 -1.2
1,214,571 + Dsui_1158 0.57 -1.9
1,214,579 - Dsui_1158 0.58 -0.3
1,214,579 - Dsui_1158 0.58 -2.2
1,214,579 - Dsui_1158 0.58 -1.7
1,214,683 - Dsui_1158 0.68 +2.0
1,214,855 + Dsui_1158 0.85 -1.2
1,214,863 - Dsui_1158 0.85 -0.7
1,214,960 + -0.6
1,214,986 + -0.6
1,215,042 - -2.2
1,215,099 + -0.1
1,215,134 + -2.2
1,215,142 - -0.3
1,215,177 + Dsui_1159 0.13 +0.4
1,215,190 - Dsui_1159 0.14 -1.9
1,215,279 + Dsui_1159 0.22 -1.6
1,215,313 + Dsui_1159 0.25 -0.6
1,215,380 - Dsui_1159 0.31 -1.0
1,215,497 - Dsui_1159 0.41 -1.8
1,215,550 + Dsui_1159 0.46 +0.4
1,215,653 - Dsui_1159 0.55 -3.1
1,215,680 + +0.4
1,215,694 - Dsui_1159 0.59 -0.6
1,215,802 + +0.4
1,215,810 - Dsui_1159 0.69 -2.2
1,215,881 - Dsui_1159 0.75 -1.8
1,215,900 + Dsui_1159 0.77 -0.6
1,215,901 - Dsui_1159 0.77 -1.5
1,216,049 - -1.4
1,216,093 - +0.0
1,216,240 - -0.6
1,216,240 - -0.6
1,216,247 - -0.4
1,216,268 + Dsui_1160 0.11 +0.4
1,216,326 + Dsui_1160 0.35 -1.2
1,216,334 - Dsui_1160 0.38 -0.6
1,216,337 + Dsui_1160 0.39 -1.9
1,216,386 + +0.4
1,216,390 + Dsui_1160 0.61 -1.6
1,216,487 + +0.4
1,216,495 - -2.2
1,216,552 + +0.4
1,216,600 - Dsui_1161 0.17 -1.0
1,216,659 - Dsui_1161 0.26 -0.8
1,216,659 - Dsui_1161 0.26 -1.6
1,216,703 - Dsui_1161 0.33 -1.2
1,216,740 - Dsui_1161 0.39 -1.7
1,216,786 - Dsui_1161 0.46 -1.2
1,216,909 - Dsui_1161 0.65 -0.8
1,216,924 + -0.6
1,217,032 + Dsui_1161 0.84 -0.6

Or see this region's nucleotide sequence