Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1463 and DvMF_1464 are separated by 165 nucleotides DvMF_1464 and DvMF_1465 are separated by 586 nucleotides
DvMF_1463: DvMF_1463 - response regulator receiver protein (RefSeq), at 1,793,379 to 1,794,743
_1463
DvMF_1464: DvMF_1464 - Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data) , at 1,794,909 to 1,796,081
_1464
DvMF_1465: DvMF_1465 - hypothetical protein (RefSeq), at 1,796,668 to 1,797,522
_1465
Position (kb)
1794
1795
1796
1797 Strain fitness (log2 ratio)
-1
0
1 at 1794.260 kb on - strand, within DvMF_1463 at 1795.105 kb on - strand, within DvMF_1464 at 1795.246 kb on - strand, within DvMF_1464 at 1795.251 kb on - strand, within DvMF_1464 at 1795.388 kb on - strand, within DvMF_1464 at 1795.393 kb on - strand, within DvMF_1464 at 1795.553 kb on + strand, within DvMF_1464 at 1795.553 kb on + strand, within DvMF_1464 at 1795.602 kb on + strand, within DvMF_1464 at 1795.609 kb on + strand, within DvMF_1464 at 1795.610 kb on - strand, within DvMF_1464 at 1795.692 kb on - strand, within DvMF_1464 at 1795.699 kb on - strand, within DvMF_1464 at 1795.993 kb on + strand at 1796.001 kb on - strand at 1796.083 kb on + strand at 1796.260 kb on + strand at 1796.485 kb on + strand at 1796.515 kb on + strand at 1796.520 kb on - strand at 1796.608 kb on - strand at 1796.740 kb on - strand at 1796.899 kb on - strand, within DvMF_1465
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 1,794,260 - DvMF_1463 0.65 -0.0 1,795,105 - DvMF_1464 0.17 -0.5 1,795,246 - DvMF_1464 0.29 -0.6 1,795,251 - DvMF_1464 0.29 -0.8 1,795,388 - DvMF_1464 0.41 -0.1 1,795,393 - DvMF_1464 0.41 +0.5 1,795,553 + DvMF_1464 0.55 -0.9 1,795,553 + DvMF_1464 0.55 -1.0 1,795,602 + DvMF_1464 0.59 -0.5 1,795,609 + DvMF_1464 0.60 -1.0 1,795,610 - DvMF_1464 0.60 -1.1 1,795,692 - DvMF_1464 0.67 -0.7 1,795,699 - DvMF_1464 0.67 -0.4 1,795,993 + -0.9 1,796,001 - -1.1 1,796,083 + +0.3 1,796,260 + +0.5 1,796,485 + +0.3 1,796,515 + +0.0 1,796,520 - +1.6 1,796,608 - +0.9 1,796,740 - +0.2 1,796,899 - DvMF_1465 0.27 -0.0
Or see this region's nucleotide sequence