Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1471 and Dsui_1472 are separated by 4 nucleotides Dsui_1472 and Dsui_1473 are separated by 118 nucleotides Dsui_1473 and Dsui_1475 are separated by 461 nucleotides
Dsui_1471: Dsui_1471 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,534,166 to 1,534,978
_1471
Dsui_1472: Dsui_1472 - deoxynucleoside kinase, at 1,534,983 to 1,535,657
_1472
Dsui_1473: Dsui_1473 - methyl-accepting chemotaxis protein, at 1,535,776 to 1,536,906
_1473
Dsui_1475: Dsui_1475 - hypothetical protein, at 1,537,368 to 1,538,777
_1475
Position (kb)
1535
1536
1537 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1535.159 kb on + strand, within Dsui_1472 at 1535.279 kb on + strand, within Dsui_1472 at 1535.303 kb on + strand, within Dsui_1472 at 1535.389 kb on - strand, within Dsui_1472 at 1535.466 kb on + strand, within Dsui_1472 at 1535.536 kb on - strand, within Dsui_1472 at 1535.781 kb on + strand at 1535.789 kb on - strand at 1535.828 kb on - strand at 1535.946 kb on + strand, within Dsui_1473 at 1535.988 kb on + strand, within Dsui_1473 at 1535.993 kb on - strand at 1535.998 kb on + strand, within Dsui_1473 at 1536.004 kb on + strand, within Dsui_1473 at 1536.102 kb on + strand, within Dsui_1473 at 1536.102 kb on + strand, within Dsui_1473 at 1536.102 kb on - strand, within Dsui_1473 at 1536.102 kb on - strand, within Dsui_1473 at 1536.110 kb on - strand, within Dsui_1473 at 1536.110 kb on - strand, within Dsui_1473 at 1536.136 kb on - strand, within Dsui_1473 at 1536.159 kb on - strand, within Dsui_1473 at 1536.250 kb on + strand, within Dsui_1473 at 1536.273 kb on + strand, within Dsui_1473 at 1536.311 kb on + strand, within Dsui_1473 at 1536.480 kb on + strand, within Dsui_1473 at 1536.488 kb on - strand, within Dsui_1473 at 1536.531 kb on + strand, within Dsui_1473 at 1536.531 kb on + strand, within Dsui_1473 at 1536.598 kb on - strand, within Dsui_1473 at 1536.625 kb on + strand, within Dsui_1473 at 1536.694 kb on - strand, within Dsui_1473 at 1536.696 kb on + strand, within Dsui_1473 at 1536.711 kb on + strand, within Dsui_1473 at 1536.719 kb on - strand, within Dsui_1473 at 1536.774 kb on + strand, within Dsui_1473 at 1536.909 kb on + strand at 1536.990 kb on + strand at 1536.998 kb on - strand at 1537.032 kb on + strand at 1537.042 kb on + strand at 1537.042 kb on + strand at 1537.051 kb on - strand at 1537.068 kb on + strand at 1537.113 kb on - strand at 1537.122 kb on - strand at 1537.128 kb on - strand at 1537.156 kb on + strand at 1537.173 kb on - strand at 1537.221 kb on + strand at 1537.237 kb on - strand at 1537.245 kb on + strand at 1537.250 kb on + strand at 1537.253 kb on - strand at 1537.253 kb on - strand at 1537.309 kb on - strand at 1537.357 kb on + strand at 1537.370 kb on + strand at 1537.380 kb on - strand at 1537.413 kb on - strand at 1537.413 kb on - strand at 1537.413 kb on - strand at 1537.413 kb on - strand at 1537.467 kb on + strand at 1537.467 kb on + strand at 1537.473 kb on + strand at 1537.475 kb on - strand at 1537.475 kb on - strand at 1537.482 kb on - strand at 1537.500 kb on + strand at 1537.532 kb on + strand, within Dsui_1475 at 1537.551 kb on + strand, within Dsui_1475 at 1537.603 kb on + strand, within Dsui_1475 at 1537.620 kb on + strand, within Dsui_1475 at 1537.628 kb on - strand, within Dsui_1475 at 1537.628 kb on - strand, within Dsui_1475 at 1537.633 kb on - strand, within Dsui_1475 at 1537.672 kb on + strand, within Dsui_1475 at 1537.706 kb on + strand, within Dsui_1475 at 1537.715 kb on + strand, within Dsui_1475 at 1537.755 kb on + strand, within Dsui_1475 at 1537.802 kb on + strand, within Dsui_1475 at 1537.802 kb on + strand, within Dsui_1475 at 1537.803 kb on + strand, within Dsui_1475 at 1537.870 kb on + strand, within Dsui_1475
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,535,159 + Dsui_1472 0.26 -0.4 1,535,279 + Dsui_1472 0.44 -0.3 1,535,303 + Dsui_1472 0.47 -2.3 1,535,389 - Dsui_1472 0.60 -0.4 1,535,466 + Dsui_1472 0.72 +0.7 1,535,536 - Dsui_1472 0.82 -1.0 1,535,781 + -0.9 1,535,789 - +0.7 1,535,828 - +0.7 1,535,946 + Dsui_1473 0.15 -0.3 1,535,988 + Dsui_1473 0.19 +0.7 1,535,993 - +0.7 1,535,998 + Dsui_1473 0.20 +0.7 1,536,004 + Dsui_1473 0.20 -1.3 1,536,102 + Dsui_1473 0.29 +0.7 1,536,102 + Dsui_1473 0.29 -0.3 1,536,102 - Dsui_1473 0.29 -2.1 1,536,102 - Dsui_1473 0.29 -1.9 1,536,110 - Dsui_1473 0.30 -0.3 1,536,110 - Dsui_1473 0.30 -3.0 1,536,136 - Dsui_1473 0.32 +0.7 1,536,159 - Dsui_1473 0.34 +0.7 1,536,250 + Dsui_1473 0.42 -0.9 1,536,273 + Dsui_1473 0.44 -1.6 1,536,311 + Dsui_1473 0.47 -0.3 1,536,480 + Dsui_1473 0.62 +0.7 1,536,488 - Dsui_1473 0.63 +0.7 1,536,531 + Dsui_1473 0.67 -0.3 1,536,531 + Dsui_1473 0.67 +0.7 1,536,598 - Dsui_1473 0.73 -0.9 1,536,625 + Dsui_1473 0.75 -0.3 1,536,694 - Dsui_1473 0.81 -1.6 1,536,696 + Dsui_1473 0.81 -1.3 1,536,711 + Dsui_1473 0.83 -1.0 1,536,719 - Dsui_1473 0.83 +0.7 1,536,774 + Dsui_1473 0.88 +0.7 1,536,909 + +0.7 1,536,990 + -1.3 1,536,998 - +0.7 1,537,032 + +0.7 1,537,042 + -0.3 1,537,042 + -0.3 1,537,051 - -3.4 1,537,068 + +0.7 1,537,113 - -1.2 1,537,122 - +0.9 1,537,128 - +0.4 1,537,156 + +0.7 1,537,173 - -0.8 1,537,221 + -0.3 1,537,237 - -0.5 1,537,245 + +0.7 1,537,250 + -0.3 1,537,253 - -0.7 1,537,253 - +0.7 1,537,309 - -1.3 1,537,357 + -0.2 1,537,370 + -0.2 1,537,380 - -0.3 1,537,413 - -0.3 1,537,413 - -0.3 1,537,413 - +0.7 1,537,413 - +0.7 1,537,467 + +0.2 1,537,467 + +0.3 1,537,473 + -0.3 1,537,475 - +0.7 1,537,475 - +0.7 1,537,482 - +0.7 1,537,500 + -0.2 1,537,532 + Dsui_1475 0.12 +0.1 1,537,551 + Dsui_1475 0.13 -0.2 1,537,603 + Dsui_1475 0.17 +0.0 1,537,620 + Dsui_1475 0.18 -0.2 1,537,628 - Dsui_1475 0.18 +0.7 1,537,628 - Dsui_1475 0.18 -0.9 1,537,633 - Dsui_1475 0.19 +0.7 1,537,672 + Dsui_1475 0.22 -0.1 1,537,706 + Dsui_1475 0.24 -0.1 1,537,715 + Dsui_1475 0.25 +0.5 1,537,755 + Dsui_1475 0.27 -0.2 1,537,802 + Dsui_1475 0.31 -0.2 1,537,802 + Dsui_1475 0.31 -0.1 1,537,803 + Dsui_1475 0.31 -0.1 1,537,870 + Dsui_1475 0.36 -0.3
Or see this region's nucleotide sequence