Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2301 and Dsui_2302 are separated by 73 nucleotides Dsui_2302 and Dsui_2303 are separated by 39 nucleotides Dsui_2303 and Dsui_2304 are separated by 29 nucleotides
Dsui_2301: Dsui_2301 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,456,044 to 2,458,458
_2301
Dsui_2302: Dsui_2302 - acyl-CoA dehydrogenase, at 2,458,532 to 2,460,325
_2302
Dsui_2303: Dsui_2303 - putative membrane protein, at 2,460,365 to 2,461,030
_2303
Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989
_2304
Position (kb)
2458
2459
2460
2461 Strain fitness (log2 ratio)
-2
-1
0
1 at 2457.578 kb on - strand at 2457.725 kb on + strand at 2457.755 kb on + strand, within Dsui_2301 at 2457.765 kb on + strand, within Dsui_2301 at 2457.768 kb on - strand, within Dsui_2301 at 2457.772 kb on + strand, within Dsui_2301 at 2457.794 kb on - strand, within Dsui_2301 at 2457.829 kb on + strand, within Dsui_2301 at 2457.836 kb on + strand at 2457.975 kb on + strand at 2457.983 kb on - strand, within Dsui_2301 at 2458.022 kb on + strand, within Dsui_2301 at 2458.022 kb on + strand, within Dsui_2301 at 2458.029 kb on - strand, within Dsui_2301 at 2458.113 kb on + strand, within Dsui_2301 at 2458.157 kb on + strand, within Dsui_2301 at 2458.157 kb on + strand, within Dsui_2301 at 2458.178 kb on - strand, within Dsui_2301 at 2458.209 kb on + strand at 2458.236 kb on - strand at 2458.346 kb on - strand at 2458.437 kb on - strand at 2458.499 kb on - strand at 2458.504 kb on - strand at 2458.623 kb on + strand at 2458.779 kb on + strand, within Dsui_2302 at 2458.787 kb on - strand, within Dsui_2302 at 2459.119 kb on + strand, within Dsui_2302 at 2459.132 kb on - strand, within Dsui_2302 at 2459.135 kb on - strand, within Dsui_2302 at 2459.168 kb on - strand, within Dsui_2302 at 2459.245 kb on - strand, within Dsui_2302 at 2459.383 kb on + strand, within Dsui_2302 at 2459.412 kb on - strand, within Dsui_2302 at 2459.654 kb on - strand, within Dsui_2302 at 2459.712 kb on + strand, within Dsui_2302 at 2459.769 kb on + strand, within Dsui_2302 at 2459.775 kb on + strand, within Dsui_2302 at 2459.844 kb on + strand, within Dsui_2302 at 2459.844 kb on - strand, within Dsui_2302 at 2459.857 kb on - strand, within Dsui_2302 at 2459.947 kb on + strand, within Dsui_2302 at 2459.964 kb on + strand, within Dsui_2302 at 2460.020 kb on - strand, within Dsui_2302 at 2460.039 kb on + strand, within Dsui_2302 at 2460.052 kb on - strand, within Dsui_2302 at 2460.127 kb on + strand, within Dsui_2302 at 2460.184 kb on + strand at 2460.193 kb on - strand at 2460.193 kb on - strand at 2460.232 kb on - strand at 2460.259 kb on + strand at 2460.267 kb on - strand at 2460.267 kb on - strand at 2460.322 kb on - strand at 2460.342 kb on + strand at 2460.407 kb on - strand at 2460.424 kb on + strand at 2460.636 kb on - strand, within Dsui_2303 at 2460.687 kb on + strand, within Dsui_2303 at 2460.687 kb on + strand, within Dsui_2303 at 2460.776 kb on + strand, within Dsui_2303 at 2460.781 kb on + strand, within Dsui_2303 at 2460.908 kb on - strand, within Dsui_2303 at 2460.992 kb on + strand at 2461.000 kb on - strand at 2461.000 kb on - strand at 2461.005 kb on - strand at 2461.057 kb on + strand at 2461.177 kb on - strand, within Dsui_2304
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 2,457,578 - +0.8 2,457,725 + +0.8 2,457,755 + Dsui_2301 0.71 -1.1 2,457,765 + Dsui_2301 0.71 +0.8 2,457,768 - Dsui_2301 0.71 +0.8 2,457,772 + Dsui_2301 0.72 +0.8 2,457,794 - Dsui_2301 0.72 -1.2 2,457,829 + Dsui_2301 0.74 -0.8 2,457,836 + -0.2 2,457,975 + +0.8 2,457,983 - Dsui_2301 0.80 -0.8 2,458,022 + Dsui_2301 0.82 -2.2 2,458,022 + Dsui_2301 0.82 -0.2 2,458,029 - Dsui_2301 0.82 -0.8 2,458,113 + Dsui_2301 0.86 +0.8 2,458,157 + Dsui_2301 0.87 -0.2 2,458,157 + Dsui_2301 0.87 +0.6 2,458,178 - Dsui_2301 0.88 +0.8 2,458,209 + -0.2 2,458,236 - +0.8 2,458,346 - +0.8 2,458,437 - -1.8 2,458,499 - -0.8 2,458,504 - -0.2 2,458,623 + +0.8 2,458,779 + Dsui_2302 0.14 -0.8 2,458,787 - Dsui_2302 0.14 -0.3 2,459,119 + Dsui_2302 0.33 +0.8 2,459,132 - Dsui_2302 0.33 -0.5 2,459,135 - Dsui_2302 0.34 -0.3 2,459,168 - Dsui_2302 0.35 +0.2 2,459,245 - Dsui_2302 0.40 -0.6 2,459,383 + Dsui_2302 0.47 -0.2 2,459,412 - Dsui_2302 0.49 -0.8 2,459,654 - Dsui_2302 0.63 +1.5 2,459,712 + Dsui_2302 0.66 -0.8 2,459,769 + Dsui_2302 0.69 +0.8 2,459,775 + Dsui_2302 0.69 -0.8 2,459,844 + Dsui_2302 0.73 +0.8 2,459,844 - Dsui_2302 0.73 -1.3 2,459,857 - Dsui_2302 0.74 -1.5 2,459,947 + Dsui_2302 0.79 -0.2 2,459,964 + Dsui_2302 0.80 -0.8 2,460,020 - Dsui_2302 0.83 -0.3 2,460,039 + Dsui_2302 0.84 -0.2 2,460,052 - Dsui_2302 0.85 -0.4 2,460,127 + Dsui_2302 0.89 -1.2 2,460,184 + -0.8 2,460,193 - -0.7 2,460,193 - +1.1 2,460,232 - -0.8 2,460,259 + +0.8 2,460,267 - -0.3 2,460,267 - +0.4 2,460,322 - -0.3 2,460,342 + +0.8 2,460,407 - +0.2 2,460,424 + +0.8 2,460,636 - Dsui_2303 0.41 -0.5 2,460,687 + Dsui_2303 0.48 +0.8 2,460,687 + Dsui_2303 0.48 -0.2 2,460,776 + Dsui_2303 0.62 -0.2 2,460,781 + Dsui_2303 0.62 -0.8 2,460,908 - Dsui_2303 0.82 -0.6 2,460,992 + -1.8 2,461,000 - +0.0 2,461,000 - -0.3 2,461,005 - -0.5 2,461,057 + +0.8 2,461,177 - Dsui_2304 0.13 -0.7
Or see this region's nucleotide sequence